Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_E02
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.38 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.66 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   4.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.1  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 230 VRVHRXNTGRSSNELDRQTTELERR 304
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
 Frame = +3

Query: 732 PXXXXXGGPPPXPX-----GXXXPPPPPLP 806
           P     GGPPP P      G   PPPPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 756 PPPXPXGXXXPPPPPLPXXRXXXPXGRXP 842
           PPP P     PPPPP P      P    P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 759  PPXPXGXXXPPPPPLP 806
            PP P G    PPPPLP
Sbjct: 1721 PPMPAGPPSAPPPPLP 1736


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 756 PPPXPXGXXXPPPPPLP 806
           P P   G   PPPPP+P
Sbjct: 347 PTPQVQGSRPPPPPPMP 363


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +3

Query: 756 PPPXPXGXXXP--PPPPLP 806
           PPP P G   P  PPPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 844 PGXLPXGXXXRXXGRGGGGGXXXPXGXGGGP 752
           PG    G      G GG GG   P G GGGP
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGG--PGGFGGGP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,464
Number of Sequences: 5004
Number of extensions: 38189
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)