Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_E02
(875 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 49 5e-08
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 47 2e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 42 6e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 42 1e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 9e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 33 0.003
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.024
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 1.6
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 49.2 bits (112), Expect = 5e-08
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 102 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVXIQADLQ 266
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 267 MNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 47.2 bits (107), Expect = 2e-07
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Frame = +3
Query: 84 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVX 248
I SA C + D LL+ Y+R P S +VV L L L ++ + +
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 249 IQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVL 368
L+ W D + W+ E+G T L V SE +W PD+VL
Sbjct: 69 TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVL 109
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 42.3 bits (95), Expect = 6e-06
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESES 239
+C +A + + D LL+ Y+R P ++ V + L L ++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 240 TVXIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWXPDVVL 368
+ ++ W D +L WN ++G T V SE +W PD+VL
Sbjct: 66 IMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVL 109
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.5 bits (93), Expect = 1e-05
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +3
Query: 108 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVXIQADLQMNW 275
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 276 IDKRLSWNAGEWGCSTWLVSSERLWXPD 359
+D+RL++ G+ + + R+W PD
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPD 89
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVXIQADLQMNWIDKR 287
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 288 LSWNAGEWGCSTWL-VSSERLWXPDVVL 368
L WN E+G L V SE +W PD+VL
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 143
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.9 bits (84), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 NIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVL 368
++ E + A L++ W+D L WN E+ G ++ +LW PD+++
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 37.9 bits (84), Expect = 1e-04
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Frame = +3
Query: 102 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVXIQAD 260
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 261 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVL 368
++ +W D +L W+ E+G L V S+ +W PD+VL
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 35.1 bits (77), Expect = 9e-04
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 IVVNLTLHLRHANIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPD 359
+V L+LH ++ E + + W D L WNA E+ G V R+W PD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 360 VVL 368
+L
Sbjct: 92 TIL 94
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 34.7 bits (76), Expect = 0.001
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +3
Query: 105 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVXIQADLQMN 272
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 273 WIDKRLSWNAGEW-GCSTWLVSSERLWXPDV 362
W D LSW ++ G + V S+ +W PD+
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDI 129
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVXIQAD---LQMNWIDKRLS 293
+ D LL+ Y++ P ++ V+ + + L+ + + + I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 294 WNAGEWGCSTWL-VSSERLWXPDVVL 368
W E+G L V S+ +W PD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVXIQAD---LQMNWIDKRLS 293
+ D LL+ Y++ P ++ V+ + + L+ + + + I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 294 WNAGEWGCSTWL-VSSERLWXPDVVL 368
W E+G L V S+ +W PD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 34.7 bits (76), Expect = 0.001
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 245
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 246 XIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVL 368
L++ W D + WN ++G L + RLW PDV++
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLM 112
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.9 bits (74), Expect = 0.002
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 180 KIVVNLTL-HLRHANIRESESTVXIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWX 353
K+ VN L ++ N+ E + L+ W D +L W+ ++ G + +++W
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 354 PDVVL 368
PD+VL
Sbjct: 111 PDIVL 115
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 33.5 bits (73), Expect = 0.003
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVXIQADLQMNWIDKR 287
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 288 LSWN--AGEWGCSTWLVSSERLWXPDV 362
L +N G T L + R+W PD+
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDL 120
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.024
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 117 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVXIQADLQMNWID 281
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 282 KRLSWNAGEWGCSTWLVSSERLWXPD 359
RLS+ S + ER+W PD
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPD 121
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 632 RSPGLLQAXXXPGPXXNPPXRGPP 703
+SP Q P P PP GPP
Sbjct: 29 QSPQAPQRGSPPNPSQGPPPGGPP 52
Score = 23.4 bits (48), Expect = 2.8
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = +3
Query: 750 GGPPPXPXGXXXPPPPPLPXXRXXXPXGRXPGEXP 854
GG P G PP P + P PG P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 326 PSAAAPLPCVPTQS 285
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,210
Number of Sequences: 438
Number of extensions: 3854
Number of successful extensions: 40
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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