Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_E01
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   206   2e-54
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   201   8e-53
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.047
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    28   1.8  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.5  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  206 bits (504), Expect = 2e-54
 Identities = 96/146 (65%), Positives = 116/146 (79%)
 Frame = +2

Query: 95  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 274
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 275 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPXAFTNQIQAAFREPRLLIVLD 454
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTP  FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 455 PAQDHQPITEXSYVNIPVIALCNTDS 532
           P  D Q I E S+VNIPVIALC+TDS
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDS 155


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  201 bits (491), Expect = 8e-53
 Identities = 91/150 (60%), Positives = 117/150 (78%)
 Frame = +2

Query: 83  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 262
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 263 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPXAFTNQIQAAFREPRLL 442
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTP  FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 443 IVLDPAQDHQPITEXSYVNIPVIALCNTDS 532
           +V DP  D Q I E S+VNIPVIALC+TDS
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDS 154


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
 Frame = +2

Query: 128 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 301
           +L++  HLG      N   + ++Y +R +G H+I+L +T   L  A   V +I     + 
Sbjct: 53  LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111

Query: 302 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPXAFTN--QIQA------------------ 418
           +      GQ+ +V+  A       I  R+ P   TN  ++Q                   
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171

Query: 419 ----AFREPRLLIVLDPAQDHQPITEXSYVNIPVIALCNTDSPXRLV 547
               ++  P L+++L+P ++     E    ++P I + +TD+  R+V
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMV 218


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +2

Query: 218 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAH 355
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVH 134


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 481 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 302
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225

Query: 301 EHISGVLDG 275
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -1

Query: 302 RTHQRGSRWLRQHEQPEQVFPRYDA 228
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,192
Number of Sequences: 5004
Number of extensions: 53472
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)