Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D17
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.38 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.3  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   8.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 278 VRVHRANTGRSSNELDRQTTELERR 352
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 771 PPXXAGXP-GPPXXPRAPXPP 830
           PP  AG P  PP  P AP PP
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPP 477


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 202 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 104
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 456 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 593
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 759  PRXXPPXXAGXPGPPXXPRAPXPP 830
            P   PP  +  P P   P AP PP
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 540 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 647
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,261
Number of Sequences: 5004
Number of extensions: 65302
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)