Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_D17
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 34 0.13
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
08_01_0059 - 394001-394708 31 1.6
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.8
03_01_0515 - 3864796-3865425 30 2.8
01_01_0715 - 5542648-5543219,5543352-5543544 30 2.8
12_01_0524 - 4167867-4168445 29 3.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.8
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 3.8
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 5.0
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.6
11_04_0097 + 13448740-13450725 29 6.6
07_01_0479 + 3606663-3607448 29 6.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.6
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.7
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.7
02_03_0237 - 16723400-16723594,16723658-16723712,16724016-167241... 28 8.7
02_03_0120 + 15463163-15465250 28 8.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.7
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.7
>07_01_0080 + 587674-588510
Length = 278
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 738 GLXRKTXPRXXPPXXAGXPGPPXXPRAPXPPXXXXXPXXXXPHXP 872
G+ R+ P PP +G P PP P P PP H P
Sbjct: 86 GMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPPLFTRRSHAP 130
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 380 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 216
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>08_01_0059 - 394001-394708
Length = 235
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 759 PRXXPPXXAGXPGPPXX-PRAPXPPXXXXXPXXXXPHXP 872
PR PP A P PP P P PP P P+ P
Sbjct: 7 PRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAP 45
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 433 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 585
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 759 PRXXPPXXAGXPGPPXXPRAPXPPXXXXXPXXXXPHXPXGXR 884
P P G GPP P AP PP P P P G R
Sbjct: 1185 PPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPP--PPGGR 1224
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 759 PRXXPPXXAGXPGPPXXPRAPXPPXXXXXPXXXXPHXP 872
P PP P PP P P PP P P P
Sbjct: 72 PPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPP 109
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +3
Query: 690 PGPRXXWEPPVAXFXHGLXRKTXPRXXPPXXAGXPGPPXXPRA 818
P PR PP A +G R P P AG P PP P A
Sbjct: 155 PTPRPSPPPPAAG-TNGTARAPSPPVPAPAPAGSPPPPPPPPA 196
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 377 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 198
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 197 CEERVDHEGQ*C 162
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 690 PGPRXXWEPPVAXFXHGLXRKTXPRXXPPXXAGXPGPPXXPRAPXPP 830
P P+ ++PP +G+ P PP + P P P P PP
Sbjct: 84 PPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPP--PPPP 128
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 718 PWXXSXMXXPGKPXPGXXPPXXPXXLXXRGXPGXPXPPXXXXPP 849
P S P P P PP P G PG P PP PP
Sbjct: 218 PVDPSAASLPPLPPP---PPPPPKPANIAGAPGLPLPPPPPPPP 258
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 745 PGKPXPGXXPPXXPXXLXXRGXPGXPXPPXXXXPP 849
P P P PP P P P PP PP
Sbjct: 324 PSNPPPAPPPPPPPPSRFNNTTPKPPPPPPPPEPP 358
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 278 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 394
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>11_04_0097 + 13448740-13450725
Length = 661
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 747 RKTXPRXXPPXXAGXPGPPXXPRAPXPPXXXXXPXXXXP 863
RK R PP G P P P AP P P P
Sbjct: 56 RKRRLRVEPPSARGGPAPQRAPGAPRPASNPNAPKLPEP 94
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +3
Query: 690 PGPRXXWEPPVAXFXHGLXRKTXPRXXPPXXA-GXPGPPXXPRAPXPPXXXXXPXXXXP 863
PGP PP+ R P PP G P PP P P PP P P
Sbjct: 205 PGPFMRGPPPMGP---PQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 771 PPXXAGXPGPPXXPRAPXPPXXXXXPXXXXPHXPXGXR 884
PP P PP + P PP P P P G +
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 284 VHRANTGRSSNELDRQTTELERRGVG 361
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 113 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 253
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_03_0237 -
16723400-16723594,16723658-16723712,16724016-16724126,
16724545-16724809,16725155-16725716
Length = 395
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 738 GLXRKTXPRXXPPXXAGXPGPPXXPRAPXPP 830
G T P P A P PP P +P PP
Sbjct: 146 GQCTSTTPTPSVPNTAAPPAPPSPPISPTPP 176
>02_03_0120 + 15463163-15465250
Length = 695
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/44 (27%), Positives = 16/44 (36%)
Frame = +3
Query: 696 PRXXWEPPVAXFXHGLXRKTXPRXXPPXXAGXPGPPXXPRAPXP 827
P + PP + + P PP + P PP P P P
Sbjct: 278 PNSSYAPPPTKYIGPMPPNNQPLPPPPSPSPSPPPPSPPPPPHP 321
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 462 GRGERSPRRWLQPRLAVPRQASTSVPRTP 376
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 459 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 337
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,911,878
Number of Sequences: 37544
Number of extensions: 633223
Number of successful extensions: 2630
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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