Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D14
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   3.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   4.6  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   6.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   6.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 2.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 369 SPPPPPXXPP 398
           +PPPPP  PP
Sbjct: 188 NPPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 2.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 372 PPPPPXXPPXXP 407
           P PPP  PP  P
Sbjct: 236 PAPPPPPPPTLP 247


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 315 SPLKRAPXPFFXXXG-GGXSPPPPPXXPPXXPFG 413
           +P+   P P     G  G  PPPPP  PP    G
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 4   WDDLFMEEIVPLVVSAASAIPSLVNAFSSSK 96
           W D+F  + +P++ ++A  IPSL  A   SK
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSK 267


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
 Frame = +3

Query: 291 SWEKKXXVSPLKRA---------PXPFFXXXGGGXSPPPPPXXPPXXPF 410
           +W  K    PLK A           P       G  PPPPP  PP   F
Sbjct: 270 TWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSNDF 318


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 324 KRAPXPFFXXXGGGXSPPPPP 386
           K+ P   F    GG +PPPPP
Sbjct: 679 KQKPSGKFEEGTGGRAPPPPP 699


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 6.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 372 PPPPPXXPP 398
           PPPPP  PP
Sbjct: 945 PPPPPPPPP 953



 Score = 20.6 bits (41), Expect(2) = 6.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 369 SPPPPPXXP 395
           +PPPPP  P
Sbjct: 906 TPPPPPPLP 914


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 406 GXXGGXXGGGGGEXPPPXXXKXGXGALFRGE 314
           G  GG  GG GG  PPP     G    F GE
Sbjct: 188 GGFGGFGGGSGG--PPPGPGGFGGFGGFGGE 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,405
Number of Sequences: 5004
Number of extensions: 20779
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)