Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_D13
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 36 0.049
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.79
09_02_0252 - 6315834-6315959,6316074-6317018 31 1.4
11_06_0610 - 25449085-25453284 30 2.4
06_03_1310 + 29238644-29240260 29 3.2
02_04_0452 + 23044190-23045227 29 3.2
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 29 4.2
02_01_0302 - 2021221-2023305 29 4.2
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 4.2
11_01_0066 - 536281-537196,537397-537452 29 5.6
04_01_0041 - 464695-464850,467485-469029 29 5.6
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 5.6
08_02_1474 - 27365548-27366054 28 7.4
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 28 7.4
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 7.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 7.4
12_02_0985 + 25052753-25053691 28 9.8
09_01_0061 + 948663-948708,949638-949993 28 9.8
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 9.8
01_06_1802 + 39978634-39978880,39979016-39979431 28 9.8
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 529 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPPEP 642
I PPSPA + S+R S +PR F TP T T+ S +PP P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 547 AISATSTRSSNPRFHTPTTP 606
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPPEP 642
P SP +S +S+R+ +PR H P + +PP P
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRPRAATPFANENHPPPP 81
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPPEP 642
PP+P A+S P HTP+ P+ T S +PP P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTP 654
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPPEP 642
PP+P A+S P HTP+ P T +PP P
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTP 687
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPP 636
PPSPA S +P HTP + S PP
Sbjct: 933 PPSPAKSTPPPEEKSPPSHTPESSSPPSEESEPP 966
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 476 AGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPLNPYXKX 655
A HPF S ++ P + P R+ L H+ P H PP+ P P P +P
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPL--APHRSPLPHHMPPRRTPPTPPPPSSPTPSH 408
Query: 656 FAP 664
P
Sbjct: 409 LPP 411
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 482 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 604
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 529 IKPP-SPAISATSTRSSNPRFHTPTTPDLTSISINPPEPVL 648
++PP SP +A + ++P PT+P+ TSI PP P L
Sbjct: 86 VEPPASPTSAAATILGASPAPALPTSPE-TSIPAPPPPPSL 125
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 538 PSPAISATSTRSSNPRFHTPTTPDLTS--ISINPPEP 642
PSP S+T+ S +P TPT P S ++ PP P
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPP 555
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.1 bits (62), Expect = 4.2
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPXL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPPEPV 645
PP P+ + T+TR+S PT P + + ++ PP P+
Sbjct: 238 PPPPSPTPTTTRAS------PTPPPIPTATVRPPPPL 268
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APXLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 521 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPLNPYXKXFAP 664
P S PP + H P Q+P PP P PS+P P +AP
Sbjct: 284 PTLQSQPPSQYPGHLPHSQVPPV---PPSA--PVPSVPALPRDPYYAP 326
>08_02_1474 - 27365548-27366054
Length = 168
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 641 GSGG--LMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 480
G+GG + M G VGVW R D AG G + +G A RG RGG
Sbjct: 69 GAGGQRVDGMGALCGEVGVWRRKIGDSRRSGGAAGGGAAVGRG--AAVGGRGARGG 122
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 526 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPPEP 642
C PSP+ S+T+T + FH + ++ + PP P
Sbjct: 254 CRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAPPPP 292
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPPEP 642
P SP T P PD+T IS+NP EP
Sbjct: 1053 PKSPFQLKTPENGVAPYGEVKPLPDITPISLNPKEP 1088
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPPEPV 645
PP+P + + RF T +TPD ++ P PV
Sbjct: 307 PPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPV 343
>12_02_0985 + 25052753-25053691
Length = 312
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 526 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRXGAEGKTTASRLTRYASR*P 347
+ +R + +R D S+ + +T S + S + GAEG TTAS LT S P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186
>09_01_0061 + 948663-948708,949638-949993
Length = 133
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 29 LCLXSFLAASAIPSLVNAFSSSKPPQTDNPSAR 127
LC+ + PS N +SS KPP T P+ R
Sbjct: 91 LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 538 PSPAISATSTRSSNPRFHTPTTPDLT 615
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>01_06_1802 + 39978634-39978880,39979016-39979431
Length = 220
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 544 PAISATSTRSSNPRFHTPTTPDLTSISINPPEP 642
P A R+S+P ++T DL I + PP P
Sbjct: 22 PPRRALRMRASSPMYYTSDDEDLPEIVLTPPAP 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,149
Number of Sequences: 37544
Number of extensions: 399400
Number of successful extensions: 1302
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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