Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D10
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    29   0.77 
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   7.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.5  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 381 NEIPTVPIYYLAKPQPW 431
           NE+PTVPI Y  KP PW
Sbjct: 274 NEVPTVPIRY--KPPPW 288


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 519 ATPLMSPYNARLESSSTGSSFPADSPKPVPMAVVSLDS 406
           +T    PY A  + ++TGSSF AD  K +PM   ++ S
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK-MPMFTSNVTS 287


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 339 GYLKRVIVTPAVYPRLLEFLHVDIQST 259
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,545
Number of Sequences: 5004
Number of extensions: 63551
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)