Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D08
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.039
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.21 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.9  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   5.9  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   5.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 737  AXPPXXSXPXXPAPPKXXPPXXXXXXPPAXXPXLXPP 847
            A PP  S P  P PP   PP       PA  P   PP
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 784 FGGGGXGRGTXXGXGGXDGLXXAGPGXLAGXPXXEG 677
           FGG G   G   G GG  G    GPG   G P   G
Sbjct: 213 FGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 781 GGGGXGRGTXXGXGGXDGLXXAGPGXLAGXPXXEG 677
           G GG G G   G GG  G    GPG   G P   G
Sbjct: 236 GPGGFGGGPG-GFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 280 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 381
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +2

Query: 725 KTVVAXPPXXSXPXXPAPPKXXPPXXXXXXPPAXXPXLXPPXP 853
           ++  A PP  +      PP   PP      PP+  P   P  P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 358 FPCVPTQSFVDPIHLKICRYPHGGL 284
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 1   CYRFGNPRXLLAYWHSLGIASIDQLS*NVDDLYYSGYRF 117
           CY +G     LA   ++   SID+L  ++ DLY + ++F
Sbjct: 102 CYAYGTDYPFLAL--NVSFDSIDRLHVSIQDLYGAQFQF 138


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 19  PRXLLAYWHSLGIASIDQLS*NVDDLYYSGYRFLLTCAIASAAECENATSL 171
           P  LL    SL +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 72  PAELLQRDKSL-VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,623
Number of Sequences: 5004
Number of extensions: 46979
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)