Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_D07
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 130 2e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 124 2e-29
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.56
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 29 0.98
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 28 1.7
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 28 1.7
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz... 27 4.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 4.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.2
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 6.9
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 6.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.9
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 6.9
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 25 9.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.2
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.2
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 130 bits (314), Expect = 2e-31
Identities = 60/86 (69%), Positives = 68/86 (79%)
Frame = +1
Query: 343 ITMETYVYKRRADGTHVINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFA 522
+ ME YV+KRR+DG H+INL +TWEKLVLAAR + IENPADV VISSRP+G RAVLKFA
Sbjct: 35 VRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFA 94
Query: 523 AHTGATPIGGRFXPGAXTNQIQAAFR 600
AHTGAT I GRF PG TN I +R
Sbjct: 95 AHTGATAIAGRFTPGNFTNYITRTYR 120
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 124 bits (298), Expect = 2e-29
Identities = 55/86 (63%), Positives = 67/86 (77%)
Frame = +1
Query: 343 ITMETYVYKRRADGTHVINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFA 522
+ M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENPADV V+S+R +G RAVLKFA
Sbjct: 34 VRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFA 93
Query: 523 AHTGATPIGGRFXPGAXTNQIQAAFR 600
AHTGAT I GRF PG TN I +R
Sbjct: 94 AHTGATAIAGRFTPGNFTNYITRTYR 119
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 391 VINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIGGRFXPG 567
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 465 SGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHRNNKW-RNTNDD*QTVNGFVA 289
S VL + SQ +FF T+ + + S ++ LH +W NT+DD T +
Sbjct: 487 STVLGNMEDIQSQTEFFSKTSPLYLTMDVGFSTIEAFLHGVTRWNENTSDDPATYE-IIL 545
Query: 288 QN 283
QN
Sbjct: 546 QN 547
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -2
Query: 461 GFSMXTTARAARTSFSQVRRKLITWVPSARRL*T*VSIVIINGETQT 321
G+++ ++ AA+ SFS +K I W S RRL + +++ N + QT
Sbjct: 209 GYTISSSVIAAKLSFSVRAKKKIKWATS-RRLISGSLVLLSNDDFQT 254
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 68 PNPFDRKHSTIRQMLDRIFKE-SKMSVGRKNGLSRKGSNTSSCSNASTIS 214
P P+D KH+ +R L+ K + V R + +K N S+ ++AS S
Sbjct: 56 PCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKKDINISTSTDASESS 105
>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 516 VCRAHRCYAYWGTFXT 563
VC CY YWG F T
Sbjct: 150 VCGVFCCYVYWGLFRT 165
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 133 ENERRQKERTVKKGQQHIVLFERLDNLRQ*ESVRIRSQ 246
E ER+Q+E+ K +Q + +++ L + E RIR Q
Sbjct: 101 EKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQ 138
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 76 WIREHVRVLCTRNVHSSARC 17
WI HVR +CT N ++ C
Sbjct: 605 WIMYHVRDVCTSNAENNMTC 624
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = -1
Query: 651 WVDGL----GQGSNTIKRRGSPECS 589
WVDG+ G GSN I R S EC+
Sbjct: 135 WVDGVNVACGHGSNCINRMTSIECT 159
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 411 GTTQVDHMGTISTSFVDIGLHRNNKWRNTNDD 316
G ++++ T ST FV + H+N TND+
Sbjct: 187 GFGNIENLATFSTKFVALSSHKNYICGLTNDN 218
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 669 HMKVQ*WVDGLGQGSNTIKRRGSPECSLDLV 577
H+ V+ V LG S+TI R+G+ EC +V
Sbjct: 1235 HLLVEDVVPLLGDASSTIHRQGAIECIYHVV 1265
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 122 FKESKMSVGRKNGLSRKGSNTSSCSNASTISDNRKVFGF 238
F + K+S G K LS+ T + SNAS D+ FGF
Sbjct: 3 FFKKKLSKG-KEILSKSNLKTHTSSNASLSIDDLNRFGF 40
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 461 PLMCSSSHHGPSVSVLY*SLPRTPVLRLLGDVS 559
PL +SH GP++ + SL T + LG V+
Sbjct: 138 PLSSITSHSGPAIDLAILSLQLTGISSTLGSVN 170
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +2
Query: 359 MSTNDVLMVPM*STCVVPGKNLFWLLVLSXPSRTPLMCSSSHH 487
M+ N V + + T PG N FW L++ M H+
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLIIRVSESAFKMHKDGHN 962
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 71 NPFDRKHSTIRQMLDRIFKESKMSVGRKNGLSRKGSN 181
N FD KHS R +RI K+S+++ K S+
Sbjct: 16 NGFDHKHSRRRGSQNRISKKSRLTYKFKRASKEHNSS 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,455
Number of Sequences: 5004
Number of extensions: 70242
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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