Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D07
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   119   3e-27
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   118   4e-27
04_03_0573 + 17329365-17330440,17330505-17331201                       31   1.0  
12_02_0691 - 22195142-22196197                                         30   2.4  
08_02_0707 - 20212190-20214592                                         29   5.4  
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511...    28   7.2  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  119 bits (286), Expect = 3e-27
 Identities = 54/83 (65%), Positives = 65/83 (78%)
 Frame = +1

Query: 349 METYVYKRRADGTHVINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAH 528
           ME YVYKRR+DG ++INL +TWEKL LAAR +V IENP D+ V S+RP+GQRAVLKFA +
Sbjct: 38  MERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQY 97

Query: 529 TGATPIGGRFXPGAXTNQIQAAF 597
           TGA  I GR  PG  TNQ+Q +F
Sbjct: 98  TGAHAIAGRHTPGTFTNQLQTSF 120



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 630 PAQDHQPITEPSYVNIPX*LLXAXXTPP*DLVDIAFPCN 746
           P  DHQPI E +  NIP  +       P   VDI  P N
Sbjct: 131 PRTDHQPIKESALGNIPT-IAFCDTDSPMRYVDIGIPAN 168


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  118 bits (285), Expect = 4e-27
 Identities = 54/83 (65%), Positives = 64/83 (77%)
 Frame = +1

Query: 349 METYVYKRRADGTHVINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAH 528
           ME YVYKRR DG ++INL +TWEKL LAAR +V IENP D+ V S+RP+GQRAVLKFA +
Sbjct: 38  MERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQY 97

Query: 529 TGATPIGGRFXPGAXTNQIQAAF 597
           TGA  I GR  PG  TNQ+Q +F
Sbjct: 98  TGAHAIAGRHTPGTFTNQLQTSF 120



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 630 PAQDHQPITEPSYVNIPX*LLXAXXTPP*DLVDIAFPCN 746
           P  DHQPI E +  NIP  +       P   VDI  P N
Sbjct: 131 PRTDHQPIKESALGNIPT-IAFCDTDSPMRYVDIGIPAN 168


>04_03_0573 + 17329365-17330440,17330505-17331201
          Length = 590

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 584 IWLVKAPGXKRPPIGVAPVCAANFSTAR*PKGRDEMTNTSAGFSMXTTARAARTSFSQVR 405
           +W+V      RPP G   VCAAN ++         +TN    FS     RAA  ++ +  
Sbjct: 22  LWIVSHLAGDRPPPGPV-VCAANGTSGC------TLTNIYGSFSDRAICRAANVTYPRTE 74

Query: 404 RKLITWVPSA 375
            +L+  V +A
Sbjct: 75  EELVAAVAAA 84


>12_02_0691 - 22195142-22196197
          Length = 351

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +1

Query: 499 QRAVLKFAAHTGAT-PIGGRFXPGAXTNQIQAAFRXTSSLDCIGPLPKTINPLLNLHMST 675
           +R  ++FAA   AT  + G    G       AA    ++L CI  LP  +  +   HM  
Sbjct: 168 RRDAVRFAAALSATCAVAGGAAVGVLGGLSSAAAAIAAAL-CIFALPMCLLYVPENHMDP 226

Query: 676 FPXNCXVXHXLPPKIWWTLLS 738
           +P    V    P   W TLL+
Sbjct: 227 YPTIDGVLQRNPAAAWCTLLA 247


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 4   WNLANSALTSARFLYITREHVPESIRQKTFD 96
           WNL N+ +     L+IT E    SIR+K  D
Sbjct: 751 WNLTNTDIVGTFHLHITTEADKSSIREKASD 781


>01_06_0364 -
           28749825-28750053,28750442-28750621,28751018-28751147,
           28751442-28751756,28752033-28752075,28752108-28752500
          Length = 429

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 480 LITALRSACCTEVCRAHRCYAYWGTFXTXCF 572
           L+  LR    T+V RAHRC        T CF
Sbjct: 97  LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,708,674
Number of Sequences: 37544
Number of extensions: 501340
Number of successful extensions: 1194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)