Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D07
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   1.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   4.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 120 ILSNICRIVECFLSNGFGNMFACYVQETCTRQRAVCKIP 4
           + S+I   V C +  G      CY Q+     RAV K+P
Sbjct: 195 VSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLP 233


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 256 RTLTANESEHFPIVGDC 206
           RT   N   HF IVG+C
Sbjct: 92  RTTAINVIRHFGIVGEC 108


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 237 SFAVKVRSKCLI*LSRFVQQTRSQSASHRLCFAIYYYDGDLCLQTTC*WYPCDQLA 404
           S  + +++KC + L  F    +S       C  IY    +LC+      Y C  +A
Sbjct: 153 SMRLTIKAKCPMELRNFPMDRQSCPLILGSCKCIYVQSINLCMAGRLFGYLCPGMA 208


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 615 KRRGSPECSLDLVSXSTXXETSPNR-RSTG 529
           KRR   ECSL   S ++   +S N  RS G
Sbjct: 169 KRRSVSECSLGTASSTSSTASSRNSDRSAG 198


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 310 LLVIVCVSPFIITMETYVYKRRAD 381
           +L  +C +PF      YVY + +D
Sbjct: 277 ILFFICWAPFHTQRLLYVYAQESD 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,305
Number of Sequences: 438
Number of extensions: 5405
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)