Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_D03
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 239 3e-64
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 194 2e-50
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 166 3e-42
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 163 4e-41
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 134 2e-32
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 123 3e-29
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 80 3e-16
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 71 3e-13
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 50 4e-07
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 29 0.60
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 29 0.79
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 26 5.6
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 9.8
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 9.8
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.8
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 239 bits (586), Expect = 3e-64
Identities = 110/172 (63%), Positives = 134/172 (77%)
Frame = +1
Query: 151 TEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSKNPC 330
T+I+ +V++R D+KL+VTSATM+S KFS FFG P FTIPGRT+PV+ F+K PC
Sbjct: 621 TDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPC 680
Query: 331 EDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDLDNAPPLTVLPIYS 510
DYV+ AV+Q LQIHL GDIL+FM GQEDIE TCE++ +RL L +AP L++LPIYS
Sbjct: 681 SDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHDAPRLSILPIYS 740
Query: 511 QLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCKLKVYN 666
Q+PADLQAKIF A PG RK +VATNIAETSLTV GI YV+ GYCKLK+YN
Sbjct: 741 QMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKMYN 792
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 194 bits (472), Expect = 2e-50
Identities = 88/176 (50%), Positives = 127/176 (72%), Gaps = 1/176 (0%)
Frame = +1
Query: 148 ATEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSKNP 327
AT+++ V + DLKLIVTSAT+D+ +FS++F P FTIPGR++PVE ++K P
Sbjct: 639 ATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYTKQP 698
Query: 328 CEDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDL-DNAPPLTVLPI 504
DY+D A+ +QIHL GDIL+F+ GQE+I+ +CE+L ER L D+ P L +LP+
Sbjct: 699 EADYLDAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPV 758
Query: 505 YSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCKLKVYNPE 672
YS LP+++Q++IF+ APPG RK ++ATNIAETSLT+DGI YV+ G+ K ++P+
Sbjct: 759 YSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPK 814
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 166 bits (404), Expect = 3e-42
Identities = 80/185 (43%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Frame = +1
Query: 148 ATEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSKNP 327
AT+I+ ++ R DLK+IV SAT+D+ KF +F + P +PGRT+PVE ++++ P
Sbjct: 205 ATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEP 264
Query: 328 CEDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDL---DNAPPLTVL 498
DY++ A++ LQIH++ GDIL+F+ G+E+IE C +T DL A PL V
Sbjct: 265 ERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVY 324
Query: 499 PIYSQLPADLQAKIFQRAPPGQ-----RKCIVATNIAETSLTVDGIMYVIXCGYCKLKVY 663
P+Y LP + Q +IF+ P RK +++TNIAETSLT+DGI+YV+ G+ K K+Y
Sbjct: 325 PLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIY 384
Query: 664 NPEDR 678
NP R
Sbjct: 385 NPRIR 389
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 163 bits (395), Expect = 4e-41
Identities = 74/174 (42%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 151 TEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSKNPC 330
T+I+ + DLK++++SAT+D+ KFS +F P F +PGR +PV+ +++ P
Sbjct: 548 TDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPE 607
Query: 331 EDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDL-DNAPPLTVLPIY 507
+Y+ A+ LQIH GDIL+F+ GQ++IE+ E + E L P + + PIY
Sbjct: 608 ANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIY 667
Query: 508 SQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCKLKVYNP 669
+ LP++LQAKIF PPG RK ++ATNIAETS+T+DG+ +VI G+ K +YNP
Sbjct: 668 ANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNP 721
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 134 bits (323), Expect = 2e-32
Identities = 66/180 (36%), Positives = 113/180 (62%), Gaps = 3/180 (1%)
Frame = +1
Query: 148 ATEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGN--VPTFTIPGRTFPVETFFSK 321
+T+++ +++ + +D +L+++SA++D+ K S FFG V T +I G+ FPVET F +
Sbjct: 154 STDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQ 213
Query: 322 NPCEDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDL-DNAPPLTVL 498
P E+YVD A++ + I+ GDIL+F+ G+++IE + + + L ++ L L
Sbjct: 214 KPTENYVDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPL 273
Query: 499 PIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCKLKVYNPEDR 678
P+++ L D Q ++F RK I +TNIAETS+T+DGI+YV+ G+ K ++YNP R
Sbjct: 274 PLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTR 333
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 123 bits (297), Expect = 3e-29
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 151 TEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSKNPC 330
T+++ +++ + L++I+ SAT+++ +FS FF I GR +PV+ ++ P
Sbjct: 225 TDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPE 284
Query: 331 EDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDL-DNAPPLTVLPIY 507
DY+D ++ Q+H + GDIL+F+ GQ++IE ++ L N P + P++
Sbjct: 285 PDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLF 344
Query: 508 SQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCKLKVYN 666
+ LP + Q ++F A RK +++TNIAETS+T+ GI YVI G K+K +N
Sbjct: 345 ASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFN 397
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/73 (47%), Positives = 48/73 (65%)
Frame = +1
Query: 472 DNAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCK 651
D + P+ VLP+YS L + Q K+F +P G R CIVATN+AETS+T+ I YV+ CG K
Sbjct: 697 DESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAK 756
Query: 652 LKVYNPEDRYGRF 690
+VYN + +F
Sbjct: 757 ERVYNEKTSVQKF 769
Score = 58.4 bits (135), Expect = 1e-09
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Frame = +1
Query: 202 LKLIVTSATMDSTKFST----FFGNVPTFTIPGRTFPVETFFSKNPCEDYVDGAVKQALQ 369
LKLI+ SAT+ T FS F P I R +PV F++ DY+ A +
Sbjct: 558 LKLIIMSATLRVTDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTKPDYLQDAFDKVCL 617
Query: 370 IHLQPDEGDILIFMPGQEDIEVTCEVLTER 459
IH + G IL+F+ GQ+++E C++L +R
Sbjct: 618 IHKRLPAGSILVFLTGQQEVEQLCQMLRKR 647
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 70.5 bits (165), Expect = 3e-13
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Frame = +1
Query: 181 VVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSK------NPCEDYV 342
V++R +LK+I+ SAT++S F +FGN I GRTFP++ ++ + N +D
Sbjct: 722 VISRIPNLKVILMSATVNSDTFKYYFGNAGHLHIHGRTFPIKDYYIEDFAPKLNEDDDEE 781
Query: 343 D----------------GAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDLD 474
D + ++ L G IL+F+PG +I + + G
Sbjct: 782 DVPRRKKKEYEIDYHLISRLVSSIDAELGSSSGSILVFLPGVSNIARCIREIKSKDGS-- 839
Query: 475 NAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIXCGYCKL 654
VLP+++ L Q + F+ +RK I ATNIAETS+T+D ++ VI G K
Sbjct: 840 ---KFEVLPLHASLNTSEQRRCFKTYT--KRKIICATNIAETSITIDDVVAVIDSGRVKQ 894
Query: 655 KVYNPE 672
Y+ E
Sbjct: 895 IDYDVE 900
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/97 (29%), Positives = 48/97 (49%)
Frame = +1
Query: 397 ILIFMPGQEDIEVTCEVLTERLGDLDNAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCI 576
+L+F+PG +I + + L E + N + ++S L + Q +F P G RK +
Sbjct: 906 VLVFLPGISEI-LRVKSLIEDMPMFRNHRKFCIYMLHSTLSSAQQQSVFNIPPKGCRKIV 964
Query: 577 VATNIAETSLTVDGIMYVIXCGYCKLKVYNPEDRYGR 687
++TNIAET +T+ + VI G + YN R
Sbjct: 965 LSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHLSR 1001
Score = 47.2 bits (107), Expect = 3e-06
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +1
Query: 151 TEIISADSMQVVARHSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFF 315
++++ + ++ +H LK+I+ SAT+++ KF +F TIPG+T+PV F+
Sbjct: 767 SDLLLIHVLHLLKQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFY 821
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 76 PMVIIXXXXXXXXXXXXVELAQKFATEIISADSMQV 183
P+ ++ V+LA++F +++I+ADSMQ+
Sbjct: 4 PLCVVIGTTGAGKSDLAVQLAKRFGSQVINADSMQI 39
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 298 PVETF-FSKNPCEDYVDGAVKQALQIHLQPDEGDILI 405
PV F FSK CE+YVD + L H + E ++I
Sbjct: 552 PVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVI 588
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = +3
Query: 363 FTNSSAARR--GRHSDIHAWSGRHRSYVRGI---NRKTGRFRQRAP--PDRPADILSAPR 521
FT+S + G H D H++SGR R G+ N + + P + D+ S+
Sbjct: 5 FTSSDQTQETHGHHVDKHSFSGRQRHPSMGVHSFNEYMNEYPEAGPLVQEEEDDMESSSY 64
Query: 522 *LAGEDIPASAARTEEVYRR 581
EDI +R+E R
Sbjct: 65 HATQEDIGDDDSRSESTRNR 84
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 336 LR*RSCQTGFTNSSAARRGRHSDIHAWSGRHRSYVRGI 449
L+ R C T N +A RGR ++ + H +YV GI
Sbjct: 179 LKTRICLTDEQNMLSAYRGRIANFKSGWDSHSAYVPGI 216
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 683 PYRSSGL*TFSLQYPQXMTYMI 618
PY SS FS+ YP TY++
Sbjct: 382 PYLSSAALHFSISYPASFTYVV 403
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 9.8
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 426 HRSYVRGINRKTGRFRQRAPPDRPADILSAPR*LAGEDIPASAARTEEVYRRHQYSRNVT 605
HRS R +R+ GR R R RP+ SA A E+ P EE R+ +
Sbjct: 196 HRSRRRSRSRRPGRSRSRRRSRRPSP--SAEHNSAEENDPELQRVIEESKRQAEEDAKRR 253
Query: 606 NRGRD 620
N D
Sbjct: 254 NMAND 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,387
Number of Sequences: 5004
Number of extensions: 64629
Number of successful extensions: 192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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