Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D02
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0530 - 6928528-6929500,6929514-6930964                           31   1.7  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    29   4.0  

>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +2

Query: 71  SWHKMSTTYIILLPVSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDP 250
           SW  ++   + +  +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + 
Sbjct: 461 SWEFITFWKLCIGELSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEK 514

Query: 251 A 253
           A
Sbjct: 515 A 515


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = +3

Query: 165 SLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIXXSESTVXIQAXLQMNXI--DKRL 338
           +L   +D L+  YD+  PPDS+ V        HA      + + +   + +N    +   
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLNRATPEATA 217

Query: 339 SWXRXASXAAXTSLXYXXRWXXPDXAL 419
           +W R A+      L +  R   P  AL
Sbjct: 218 AWLRVAAPRLTGELYFRNRSSAPFEAL 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,779
Number of Sequences: 37544
Number of extensions: 242223
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)