Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D02
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    30   0.026
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 0.026
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +3

Query: 150 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIXXSESTVXIQAXLQ 314
           C++ TS S +      L   YDRD  P+ K    ++  L ++H N+     TV     L+
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87

Query: 315 MNXIDKRLSW 344
           +      L+W
Sbjct: 88  LMWEQSHLTW 97


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 75  GIKCRRLILFCYRFLLTCAIASAAECENATSLSLMI 182
           G KC   I   +R  L C++   +E +N  + SL +
Sbjct: 67  GSKCTWTITSYHRINLKCSLVEFSENKNCNAGSLTV 102


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 173 GQ*CCVFAFCRTSYSTSEEKPVTE 102
           G+ CC   F  T Y   + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,469
Number of Sequences: 438
Number of extensions: 2047
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)