Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_D01
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.3  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   7.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   7.1  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   7.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.4  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   9.4  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 286  NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 176
            ++S   N++R+G L +G ++VC   GD +   LSC   G+
Sbjct: 885  DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -2

Query: 316 TIGGHRDGMLNYSYLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKM 137
           T  GH++ + N S+ H+S      V+         E + L   DR       K++  P  
Sbjct: 151 TFKGHKNHLENRSFFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQ 208

Query: 136 NSVELFQVA 110
           N ++L +V+
Sbjct: 209 NLIKLLKVS 217


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  NNLTGRDLEEFNRIHFGRRNNLEI 166
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 363 SSMLPAKRVLTSSVSXSCGICPSRSAQGXXXRGASLPN 476
           S  +P+K  L  SV+ S  I P R A+       S PN
Sbjct: 140 SPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPN 177


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 65  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 175
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 424 HIPQLLETDDVNTLLAGNIDDLLDFIENC 338
           ++P+LLE  D+N L  G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 504 KVVVGPSSXDSANSHHGXXSLVQNAKGIFHNXWKQMMLTPSWPATSMIFLTLLKIAFFCS 325
           ++ V   S ++A SH       QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASHCFLKD--QNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 324 LTGR 313
           L GR
Sbjct: 290 LFGR 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,253
Number of Sequences: 5004
Number of extensions: 39482
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)