Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C24
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0530 - 6928528-6929500,6929514-6930964                           32   0.50 
12_01_0524 - 4167867-4168445                                           31   0.88 
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    29   3.6  
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541...    29   6.2  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.2  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   8.2  

>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 1   YWILFLLPVSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 165
           +W L +  +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 467 FWKLCIGELSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = -1

Query: 292 RQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIV 113
           RQPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V
Sbjct: 103 RQPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV 160

Query: 112 RCEERVDHEGQ*C 74
             EE  + E + C
Sbjct: 161 -VEEVEEEEEKEC 172


>09_06_0244 +
           21822811-21823246,21823337-21823468,21823949-21824037,
           21824135-21824224,21825033-21825603,21826097-21826734,
           21826978-21827098,21827223-21827337,21828234-21829723,
           21829830-21829901,21830151-21830196,21830413-21830515,
           21830591-21830674,21831035-21831475,21831651-21831746,
           21831896-21832045,21832131-21832274,21832414-21832527,
           21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 502 HPXTGLERAKSACRWAQLSNCIEXWSANVQALYPGDGAV 386
           HP  GLE + S  + + L    +  SANVQ  +PG+ +V
Sbjct: 105 HPRHGLEASSSVEQPSCLGPLFQNTSANVQGSFPGECSV 143


>08_02_1498 +
           27553449-27553730,27553834-27553946,27554063-27554129,
           27554310-27554402,27554516-27554659,27554860-27554954,
           27555120-27555412,27555514-27555632,27555742-27556094,
           27556177-27556286,27556403-27556512,27556802-27557671
          Length = 882

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 261 QGSGAAALGWRPRNACGGLTWYC*TRLQPPXGT 359
           QG GA A  W+P      LTWY   R  PP GT
Sbjct: 643 QGMGAVA--WKPGKDNQPLTWYR-RRFDPPSGT 672


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 374 GRGERSPRRWLQPRLAVPRQASTSVPRTP 288
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 371 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 249
           R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,538,117
Number of Sequences: 37544
Number of extensions: 496456
Number of successful extensions: 1444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)