Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C14
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.2  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +1

Query: 496 RARVPXTXXPPPSXXXXXPAXAPXR--PXRXPXXXPPGXPPPA 618
           +++ P +  P P         AP R  P       PPG PP A
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = -3

Query: 395 GXPPXPPGGXKXXXXXXPPXPLXXXPPXXRPG 300
           G  P P    +      PP P    PP   PG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 15/57 (26%), Positives = 16/57 (28%)
 Frame = +1

Query: 712 PPPRXPXPPRXRAXXAPXSPXXPXGXXXXXPXXXXVLAPPXAXPXRPDPXXRRXPXP 882
           P PR P P   R   A      P       P    +   P A P    P     P P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 163


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 568 RPXRXPXXXPPGXPP 612
           R  R P   PPG PP
Sbjct: 43  RSNRGPVLFPPGPPP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,453
Number of Sequences: 438
Number of extensions: 3960
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)