Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_C09
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 305 3e-84
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 305 4e-84
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.5
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 5.5
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 5.5
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 7.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.5
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 305 bits (750), Expect = 3e-84
Identities = 143/248 (57%), Positives = 179/248 (72%)
Frame = +2
Query: 35 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
MSH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 215 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 394
DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 395 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 574
NW+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 575 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFGXXEMIDXXXXXXXXXXXXXTSRLAHKXX 754
MEIQ+NGG++ DKV+WA EH EK + + S F EMID T+R K
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238
Query: 755 TRKTPRVL 778
RKT R L
Sbjct: 239 PRKTHRGL 246
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 305 bits (749), Expect = 4e-84
Identities = 142/248 (57%), Positives = 179/248 (72%)
Frame = +2
Query: 35 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
MSH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 215 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 394
DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 395 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 574
NW+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 575 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFGXXEMIDXXXXXXXXXXXXXTSRLAHKXX 754
MEIQ+NGG++ DKV+WA EH EK + + S F EMID T+R K
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238
Query: 755 TRKTPRVL 778
RKT R L
Sbjct: 239 PRKTHRGL 246
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 503 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 613
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 309 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 461
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 8 ILVCDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 184
IL +LS K R+ S +P + G K FP D+P S P+ + G
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343
Query: 185 AGMTHVVREPDRPGSKI 235
T ++ P++ +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 211 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 47
F N VG G+I D S + +R+VF D +G L ++SH T F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 466 FASKLILPFLTGFSESLLLAFVPVFVEATST 374
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,009
Number of Sequences: 5004
Number of extensions: 65552
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -