Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C07
         (954 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           29   4.1  
02_01_0302 - 2021221-2023305                                           29   5.5  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   7.2  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    28   9.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   9.5  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 145 PPPXKRXGXPPPPXXRGVXXXP 80
           PPP  R G PPPP   G+   P
Sbjct: 228 PPPGMRPGMPPPPFRPGMPPPP 249


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +2

Query: 821 GGXGGGXPPXXXFXXXKKTPXPPPXXXXXVXXPXPLXXF 937
           GG GGG PP        K P PP         P P+  +
Sbjct: 655 GGHGGGHPPSTSTPPGGKLPFPPVYGVSYASPPPPVKPY 693


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/67 (31%), Positives = 22/67 (32%)
 Frame = -3

Query: 295 PRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXGXP 116
           P+V  P PQ    PPP        G  P    PP GG             PP       P
Sbjct: 270 PQVPPPPPQAPPPPPPNAP----MGMPPRIPPPPVGGTQPPPPPPPLANGPP----RSIP 321

Query: 115 PPPXXRG 95
           PPP   G
Sbjct: 322 PPPMTGG 328


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 148 SPPPXKRXGXPPPPXXRGVXXXP 80
           SPPP +  G PPPP   G    P
Sbjct: 919 SPPPPRPPGAPPPPPPPGKPGGP 941



 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 877 PPPPPXKXGXXXAPAPP 927
           PPPPP K G    P PP
Sbjct: 931 PPPPPGKPGGPPPPPPP 947


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = -3

Query: 295 PRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXGXP 116
           P    P P +   PP       +  G P    P  G      G    F +PPP    G P
Sbjct: 6   PYAPHPPPPQGGFPPQPPPMNPY--GPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPP 63

Query: 115 PP 110
           PP
Sbjct: 64  PP 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,940
Number of Sequences: 37544
Number of extensions: 409680
Number of successful extensions: 1931
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)