Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_C07
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 32 0.53
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.53
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 29 4.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.9
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 6.5
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 820 GGXGGGXSPXXXXXXXXKNPPPPPXKXGXXXAPAP 924
GG GGG S PPPPP APAP
Sbjct: 23 GGGGGGYSGGGGGGGDAAPPPPPPADAAPAPAPAP 57
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.3 bits (70), Expect = 0.53
Identities = 24/63 (38%), Positives = 26/63 (41%)
Frame = -3
Query: 298 SPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXGX 119
SP+ RGP PPP + GG P PP GG G PPP R G
Sbjct: 1548 SPQNRGPP--MGGLPPPHGGMNGWRGGPP----PPRGGSHCQG-PPPLMGGPPP--RLGM 1598
Query: 118 PPP 110
PPP
Sbjct: 1599 PPP 1601
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/74 (32%), Positives = 25/74 (33%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXG 122
+ P GP P PPP GG P PP GG G PPP
Sbjct: 719 LPPITGGPPP-----PPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPP-PPPPGGCPP 770
Query: 121 XPPPPXXRGVXXXP 80
PPPP G P
Sbjct: 771 PPPPPPPGGFKGGP 784
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXG 122
+ P GP P PPP GG P PP GG PPP G
Sbjct: 735 LPPITGGPPP-----PPPPGGLPPISGGPPP-PPPPPGGCPPPPPP------PPPGGFKG 782
Query: 121 XPPPPXXRGV 92
PPPP G+
Sbjct: 783 GPPPPPPPGM 792
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 832 GGXSPXXXXXXXXKNPPPPPXKXGXXXAPAPP 927
GG P PPPPP G P PP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/74 (32%), Positives = 25/74 (33%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXG 122
+ P GP P PPP GG P PP GG G PPP
Sbjct: 719 LPPITGGPPP-----PPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPP-PPPPGGCPP 770
Query: 121 XPPPPXXRGVXXXP 80
PPPP G P
Sbjct: 771 PPPPPPPGGFKGGP 784
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXG 122
+ P GP P PPP GG P PP GG PPP G
Sbjct: 735 LPPITGGPPP-----PPPPGGLPPISGGPPP-PPPPPGGCPPPPPP------PPPGGFKG 782
Query: 121 XPPPPXXRGV 92
PPPP G+
Sbjct: 783 GPPPPPPPGM 792
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 832 GGXSPXXXXXXXXKNPPPPPXKXGXXXAPAPP 927
GG P PPPPP G P PP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/74 (32%), Positives = 25/74 (33%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXG 122
+ P GP P PPP GG P PP GG G PPP
Sbjct: 302 LPPITGGPPP-----PPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPP-PPPPGGCPP 353
Query: 121 XPPPPXXRGVXXXP 80
PPPP G P
Sbjct: 354 PPPPPPPGGFKGGP 367
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXG 122
+ P GP P PPP GG P PP GG PPP G
Sbjct: 318 LPPITGGPPP-----PPPPGGLPPISGGPPP-PPPPPGGCPPPPPP------PPPGGFKG 365
Query: 121 XPPPPXXRGV 92
PPPP G+
Sbjct: 366 GPPPPPPPGM 375
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 832 GGXSPXXXXXXXXKNPPPPPXKXGXXXAPAPP 927
GG P PPPPP G P PP
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 823 GXGGGXSPXXXXXXXXKNPPPPPXKXGXXXAPAPP 927
G G G P PPPPP G AP PP
Sbjct: 23 GLGLGLGPQRPQQCCCPPPPPPPPCGGGYEAPPPP 57
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 154 FFSPPPXKRXGXPPPPXXRGVXXXPXXF 71
FF PPP PPPP G+ P F
Sbjct: 63 FFIPPPVPNGFIPPPPGPGGIPPPPPMF 90
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 926 GGAGAXXXPXXXGGGGGFFXXXKXXWXGXXPPPXPP 819
GG G GGGGG G PPP PP
Sbjct: 81 GGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 820 GGXGGGXSPXXXXXXXXKNPPPPPXKXGXXXAPAP 924
GG GGG + PPPPP AP P
Sbjct: 20 GGGGGGEAGYSGGAGVEAPPPPPPADAAPAPAPEP 54
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWG--GXPFFXXPPXGGXXXXGGXXXFFFSPPPXKR 128
++PR P PPP G G P PP G PPP R
Sbjct: 283 MTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 342
Query: 127 --XGXPPPPXXR 98
G PPPP R
Sbjct: 343 YPGGMPPPPPPR 354
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Frame = -3
Query: 301 ISPRVRGPXPQKKXXPPPKXXXXXFWG--GXPFFXXPPXGGXXXXGGXXXFFFSPPPXKR 128
++PR P PPP G G P PP G PPP R
Sbjct: 293 MTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 352
Query: 127 --XGXPPPPXXR 98
G PPPP R
Sbjct: 353 YPGGMPPPPPPR 364
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/67 (32%), Positives = 24/67 (35%)
Frame = -3
Query: 295 PRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXGXP 116
P P P + PPP G P PP GG SPPP + P
Sbjct: 259 PAAGSPPPPRTGSPPPPPT-----GSPP---PPPAGG------------SPPPPRAGSPP 298
Query: 115 PPPXXRG 95
PPP RG
Sbjct: 299 PPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/67 (32%), Positives = 24/67 (35%)
Frame = -3
Query: 295 PRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXGXP 116
P P P + PPP G P PP GG SPPP + P
Sbjct: 280 PAAGSPPPPRTGSPPPPPT-----GSPP---PPPAGG------------SPPPPRAGSPP 319
Query: 115 PPPXXRG 95
PPP RG
Sbjct: 320 PPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/67 (32%), Positives = 24/67 (35%)
Frame = -3
Query: 295 PRVRGPXPQKKXXPPPKXXXXXFWGGXPFFXXPPXGGXXXXGGXXXFFFSPPPXKRXGXP 116
P P P + PPP G P PP GG SPPP + P
Sbjct: 265 PAAGSPPPPRTGSPPPPPT-----GSPP---PPPAGG------------SPPPPRAGSPP 304
Query: 115 PPPXXRG 95
PPP RG
Sbjct: 305 PPPPPRG 311
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 775 NXXPPXXKKKNXXFXGGXGGGXSPXXXXXXXXKNPPPPPXKXGXXXAPAP 924
N PP N + GG GGG PPPPP + P P
Sbjct: 68 NGPPPFDGGYNRPYGGGGGGGYG---RPQGYVPPPPPPPTQPEPEPEPRP 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,605
Number of Sequences: 27780
Number of extensions: 248849
Number of successful extensions: 950
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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