Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C06
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    30   0.36 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.62 
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    27   3.3  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    27   3.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.4  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   7.6  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +1

Query: 178 FNKIMSTLKLTSEVRSGLYSHWRDVFEHVRSTAKKKHYADQNTSSGTPQEREC-SIRKSC 354
           F+K++ST+  ++E+ + L   WRD  +HV    +     +   +S       C       
Sbjct: 384 FSKMLSTI--SNEI-TNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440

Query: 355 NNVSVTSMEDLSHEEIVTSYVLAHVAQF 438
           N+ ++ S EDL HE  +T+ ++A+  ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 253  FEHVRSTAKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 402
            F+   +  K+K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1709 FDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 202 KLTSEVRSGLYSHWRDVFEH-VRSTAKKKHYADQNTSSGTP 321
           + T   +SG  ++ RDVF H VRS + + H   + +S  +P
Sbjct: 4   RTTQAKKSGQNTNIRDVFPHVVRSNSSQSHIGKKVSSEQSP 44


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 244 RDVFEHVRSTAKKKHYADQNTSSGTPQEREC 336
           R+VFE     A  KH      SSGT +++ C
Sbjct: 169 REVFESATRAAMLKHKPKVKPSSGTKKKKRC 199


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 355 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 480
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 401 SSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRNLK*NFDRIIDRIMDLS 562
           S  LTF   +P  T +V+T   +T    V S  K L N   NF+ +  R  D+S
Sbjct: 193 SGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDIS 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,642
Number of Sequences: 5004
Number of extensions: 55902
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)