Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C03
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    32   0.48 
07_01_0479 + 3606663-3607448                                           31   1.1  
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    30   2.0  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   4.5  
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    29   4.5  
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    28   7.9  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 166 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTGQEITL 50
           LDDE   YL  R  V   +  RLL+F++VD  STG  + L
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTGSSVIL 318


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
 Frame = +2

Query: 395 YXGGAETGPRPIFSXGPRGFXPXXXNGXXGGKPP--XPXXKPPXXPXXXNPPPXG 553
           + GG    P P     P    P    G  GG PP   P   PP       PPP G
Sbjct: 197 FPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPG 251


>11_04_0415 -
           17395988-17396161,17397349-17397444,17397489-17398026,
           17398106-17398422
          Length = 374

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 401 GGAETGPRPIFSXGPRGFXPXXXNGXXGGKP 493
           GG   GPR     GPRGF      G  GG P
Sbjct: 10  GGGGGGPRGFGGGGPRGFGGGGPRGFGGGGP 40


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +2

Query: 401  GGAETGPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPP 547
            GG +  P P    G  G  P    G  GG P  P   PP       PPP
Sbjct: 1131 GGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPP---PPAGFRGGTPPP 1176


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 380 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQTGSSFPADSPKPVP 240
           + +GFS TI R+D  ++  L      P       G+  PA  P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
 Frame = +2

Query: 404 GAETGPRPIFSXGPRGFXPXXX--NGXXGGKPPXPXXKPPXX-PXXXNPPPXGXFXGGXX 574
           G  + P+P +   PRG  P     +   GG P  P  +          PPP     GG  
Sbjct: 348 GPRSQPQPGYGYPPRGPPPQNMPYSQPYGGYPQQPPPRGGMGWDQRQGPPPHASHHGGGY 407

Query: 575 XFXKKXXGXFXGXP 616
            + K+    + G P
Sbjct: 408 DYYKQGSQPYEGQP 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,044
Number of Sequences: 37544
Number of extensions: 405437
Number of successful extensions: 1217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)