Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C03
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058563-1|AAL13792.1|  652|Drosophila melanogaster LD25239p pro...    33   0.63 
AE014296-1420|AAF50445.2|  652|Drosophila melanogaster CG7185-PA...    33   0.63 
AY113383-1|AAM29388.1|  242|Drosophila melanogaster RE04770p pro...    30   4.4  
AE014296-227|AAF47476.2|  242|Drosophila melanogaster CG9184-PA,...    30   4.4  
AE014296-1088|AAF50683.1|  239|Drosophila melanogaster CG12330-P...    29   7.8  

>AY058563-1|AAL13792.1|  652|Drosophila melanogaster LD25239p
           protein.
          Length = 652

 Score = 32.7 bits (71), Expect = 0.63
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +2

Query: 404 GAETGP--RPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPPXG 553
           G   GP  RP+F  GP G       G    +PP     PP  P    PP  G
Sbjct: 299 GPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPG 350


>AE014296-1420|AAF50445.2|  652|Drosophila melanogaster CG7185-PA
           protein.
          Length = 652

 Score = 32.7 bits (71), Expect = 0.63
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +2

Query: 404 GAETGP--RPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPPXG 553
           G   GP  RP+F  GP G       G    +PP     PP  P    PP  G
Sbjct: 299 GPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPG 350


>AY113383-1|AAM29388.1|  242|Drosophila melanogaster RE04770p
           protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 353 RSSLKNHYFHWFITYXGGAETGPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXX 532
           + S+++HY++         + G  P +S GP  + P        G PP P   PP  P  
Sbjct: 83  KPSVQHHYYYPPEDQQHPRQYGYPPQWSPGPPAYPPPPQRPW--GPPPPPGPPPPGPPPP 140

Query: 533 XNP 541
             P
Sbjct: 141 PGP 143


>AE014296-227|AAF47476.2|  242|Drosophila melanogaster CG9184-PA,
           isoform A protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 353 RSSLKNHYFHWFITYXGGAETGPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXX 532
           + S+++HY++         + G  P +S GP  + P        G PP P   PP  P  
Sbjct: 83  KPSVQHHYYYPPEDQQHPRQYGYPPQWSPGPPAYPPPPQRPW--GPPPPPGPPPPGPPPP 140

Query: 533 XNP 541
             P
Sbjct: 141 PGP 143


>AE014296-1088|AAF50683.1|  239|Drosophila melanogaster CG12330-PA
           protein.
          Length = 239

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = +2

Query: 419 PRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPPXGXF 559
           P P  S GP    P   NG     PP P   PP       PPP   +
Sbjct: 48  PAPANSYGP----PKKGNGKPPPAPPKPSYGPPPKNGNGKPPPSNAY 90


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,375,542
Number of Sequences: 53049
Number of extensions: 633548
Number of successful extensions: 2295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2191
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)