Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C03
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    34   0.11 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    34   0.11 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    34   0.11 
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   1.3  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    29   4.1  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     29   4.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   5.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   5.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   5.4  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    28   7.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +2

Query: 416 GPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPPXGXFXGG 568
           G  P  + GP    P        G PP P   P   P    PPP G F GG
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +2

Query: 416 GPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPPXGXFXGG 568
           G  P  + GP    P        G PP P   P   P    PPP G F GG
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +2

Query: 416 GPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPPPXGXFXGG 568
           G  P  + GP    P        G PP P   P   P    PPP G F GG
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -1

Query: 546 GGGXXXXGXXGGFXXGXGGXPPXXPFXXXGXK-PRGPXENIGRGPVSAPP 400
           GGG    G  GGF  G GG     PF       P GP  + G    +A P
Sbjct: 484 GGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPSPPSGPDPDFGGDTAAAGP 533


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
 Frame = +2

Query: 416 GPRPIFSXGPRGFXPXXXNGXXGGKPPXP----XXKPPXXPXXXNPPPXG 553
           GP P  S  P  F P   +G  G   P P      + P  P    PPP G
Sbjct: 366 GPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPG 415


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +2

Query: 404 GAETGPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPP 544
           GA   P P    GP G  P   NG  GG+ P     PP  P     P
Sbjct: 274 GAPGRPGPPGQPGPAG--PPGENGKGGGQGPSGLPGPPGQPGQNGAP 318


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +2

Query: 404 GAETGPRPIFSXGPRGFXPXXXNGXXGGKPPXPXXKPPXXPXXXNPP 544
           GA   P P    GP G  P   NG  GG+ P     PP  P     P
Sbjct: 255 GAPGRPGPPGQPGPAG--PPGENGKGGGQGPSGLPGPPGQPGQNGAP 299


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 482 GGKPPXPXXKPPXXPXXXNPPP 547
           G  PP P   PP  P   +PPP
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPP 291


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 482 GGKPPXPXXKPPXXPXXXNPPP 547
           G  PP P   PP  P   +PPP
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPP 312


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 482 GGKPPXPXXKPPXXPXXXNPPP 547
           G  PP P   PP  P   +PPP
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPP 297


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 546 GGGXXXXGXXGGFXXGXGGXPPXXPFXXXGXKPRGPXENIGRGPV 412
           GGG    G  GG   G G  PP  P    G + R P ++    P+
Sbjct: 192 GGGMGGGGGSGGSGGGSGRFPPPPPPYGGGGR-RRPYDDYDSDPI 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,898
Number of Sequences: 27780
Number of extensions: 298050
Number of successful extensions: 784
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)