Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_C02
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   2.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/63 (26%), Positives = 20/63 (31%)
 Frame = +2

Query: 560 WXPXRXPPXXXVPXTXGXSAXXXLXXPAFXXGXXXHPXPGAPPXPXPPAXGGXPAGXXRV 739
           + P R PP    P T G S    +           +    APP   PP  G    G    
Sbjct: 39  YQPPRMPPPSTRPQTDGNSNQIPMENVGHISLSSANSHAYAPPSGPPPNTGANSYGNPNY 98

Query: 740 XGP 748
            GP
Sbjct: 99  SGP 101


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/71 (25%), Positives = 20/71 (28%)
 Frame = +2

Query: 566  PXRXPPXXXVPXTXGXSAXXXLXXPAFXXGXXXHPXPGAPPXPXPPAXGGXPAGXXRVXG 745
            P    P    P     S    +  P+        P  G PP P  PA G  P        
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP-KPAAGVPPVPPPSEAP 1198

Query: 746  PXAXPXAGXXP 778
            P   P  G  P
Sbjct: 1199 PVPKPSVGVPP 1209


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
 Frame = +2

Query: 566 PXRXPPXXXVPXTXGXSAXXXLXXPAFXXGXXXHPXP-----GAPPXPXPPAXGGXPAGX 730
           P   PP   VP      A   +  PA   G    P P     GA P P PP      AG 
Sbjct: 732 PPPPPPAVIVPTPA--PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 731 XRVXGP 748
            R   P
Sbjct: 790 SRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,710
Number of Sequences: 5004
Number of extensions: 24842
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)