Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_C02
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 40 0.002
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 35 0.10
07_03_1067 + 23728642-23728690,23728832-23729010 31 0.97
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.7
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 30 2.2
05_02_0048 - 6066921-6067541 30 3.0
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 29 6.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.8
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 29 6.8
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/79 (34%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Frame = +2
Query: 683 PPXPXPPAXGGXPAGXXRVXGPXAXPXAGXXPXXXXXXXSXXEGXTXXXPXPPXARXAQX 862
PP P PP G AG P A P A P + G P PP A A
Sbjct: 304 PPHPLPPGAGAG-AGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPR 362
Query: 863 XXGP-XGPPRNPXAXXGSG 916
GP GPP P A G
Sbjct: 363 PPGPGPGPPPPPGAAGRGG 381
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 34.7 bits (76), Expect = 0.10
Identities = 25/76 (32%), Positives = 27/76 (35%)
Frame = +2
Query: 668 PXPGAPPXPXPPAXGGXPAGXXRVXGPXAXPXAGXXPXXXXXXXSXXEGXTXXXPXPPXA 847
P P APP P P A G P R+ P P G P + G P PP
Sbjct: 275 PPPQAPPPPPPNAPMGMP---PRIPPP---PVGGTQPPPPPPPLA--NGPPRSIPPPPMT 326
Query: 848 RXAQXXXGPXGPPRNP 895
A P PPR P
Sbjct: 327 GGAMANFTPGAPPRPP 342
>07_03_1067 + 23728642-23728690,23728832-23729010
Length = 75
Score = 31.5 bits (68), Expect = 0.97
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 653 GXXXHPXPGAPPXPXPPAXGGXPAG 727
G +P PG PP PPA G PAG
Sbjct: 20 GKDGYPPPGYPPAGYPPAQGYPPAG 44
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/89 (28%), Positives = 25/89 (28%)
Frame = +2
Query: 653 GXXXHPXPGAPPXPXPPAXGGXPAGXXRVXGPXAXPXAGXXPXXXXXXXSXXEGXTXXXP 832
G H P AP P P GG P G P A P P
Sbjct: 1129 GLGGHQAPPAP--PLPEGIGGVPPPPP--VGGLGGPPAPPPPAGFRGGTPPPNAHGGVAP 1184
Query: 833 XPPXARXAQXXXGPXGPPRNPXAXXGSGV 919
PP R GP PP P GV
Sbjct: 1185 PPPPPRGHGGVGGPPTPPGAPAPPMPPGV 1213
Score = 30.3 bits (65), Expect = 2.2
Identities = 26/82 (31%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Frame = -2
Query: 915 PDPXXAXGFRGGPXGPXXXWAXRAXGGXGXXXVXPSXXXXXXXXXXGXXPAX-GLAXGPX 739
P P GFRGG P A GG V P G P G P
Sbjct: 1161 PAPPPPAGFRGGTPPP------NAHGG-----VAPPPPPPRGHGGVGGPPTPPGAPAPPM 1209
Query: 738 TRXXPAGXPPXAGGXGXGGAPG 673
P G PP GG G PG
Sbjct: 1210 PPGVPGGPPPPPGGRGLPAPPG 1231
>01_05_0343 +
21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 726 PAGXPPXAGGXGXGGAPGXG 667
PA PP GG G GGAP G
Sbjct: 6 PATEPPAGGGGGGGGAPAPG 25
>05_02_0048 - 6066921-6067541
Length = 206
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 629 LXXPAFXXGXXXHPXPGAPPXPXPPAXGG 715
L A G P P APP P PPA GG
Sbjct: 94 LASSAAAAGAAATPAPFAPPPPPPPAAGG 122
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Frame = +2
Query: 668 PXPGAPPXP-XPPAXGGXPAGXXRVXGPXAXPXAGXXPXXXXXXXSXXEGXTXXXPXPPX 844
P PG+PP P PP PA + P G P + P P
Sbjct: 68 PFPGSPPPPSQPPPPFARPAAPVQQQPPPFGGPPGVMPSQPLQQQQQQQRPAFGGP-PSG 126
Query: 845 ARXAQXXXGPXGPP 886
A AQ P G P
Sbjct: 127 APPAQAQRTPFGGP 140
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.8
Identities = 27/103 (26%), Positives = 31/103 (30%)
Frame = +2
Query: 578 PPXXXVPXTXGXSAXXXLXXPAFXXGXXXHPXPGAPPXPXPPAXGGXPAGXXRVXGPXAX 757
PP P A + PA P APP P PP P GP
Sbjct: 291 PPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPP---KGPPPP 347
Query: 758 PXAGXXPXXXXXXXSXXEGXTXXXPXPPXARXAQXXXGPXGPP 886
P A P +G + P PP + GP PP
Sbjct: 348 PPAKGPP-----PPPPPKGPSPPPPPPPGGKKG----GPPPPP 381
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 677 GAPPXPXPPAXGGXPAGXXRVXGPXAXPXAG 769
G PP P PP GG R GP P G
Sbjct: 153 GLPPPPPPPVTGGAFRRYARHLGPRRAPKPG 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,752,320
Number of Sequences: 37544
Number of extensions: 337736
Number of successful extensions: 1701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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