Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_B23
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 36 0.038
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 33 0.27
01_06_0456 + 29521282-29522064 32 0.62
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 3.3
06_03_1448 + 30235336-30236763 29 5.8
06_03_1443 + 30182018-30183445 29 5.8
06_03_1440 + 30166515-30167942 29 5.8
06_03_1437 + 30151030-30152457 29 5.8
06_03_1429 + 30100834-30102261 29 5.8
06_03_1425 + 30084383-30085810 29 5.8
06_03_1420 - 30053713-30055140 29 5.8
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 29 5.8
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 5.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.8
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 28 7.7
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 35.9 bits (79), Expect = 0.038
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 7 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRRKKTLFELDS 159
G+ PR + D EW N PT+ ++ + +PRE Q+ K +F L+S
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -2
Query: 425 PPPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 297
PPP++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 396 PPPLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 404 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 282
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 415 TGGGTSVKE*RRCPKASSAXTETSRGAKGKSWLDPXV 525
+GG +S P A++A T TS+ A W DP +
Sbjct: 3 SGGASSAPATASTPAAAAATTTTSKTASASLWWDPFI 39
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 409 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 272
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 470 AELALGHLRYSLTDVPPPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLE-RNTVRP 300
A +A L T PPP P W+ PR +R S RRA + ++A L R RP
Sbjct: 217 AAMAQAMLAVISTPAPPP---PLWRPPRRRARSSSSPRRATAFKAYNAALSPRARPRP 271
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 301 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQA----GSLTGGG 426
G+T+ R R A W RG A RR +LP G +A GS +GGG
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGSASGGG 83
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 337 TTLHAWNETPCARRYY 290
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 449 LRYSLTDVPPPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRP 300
L SL+ PPP + + P R S RR P H RL +V P
Sbjct: 13 LSLSLSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,044,845
Number of Sequences: 37544
Number of extensions: 449284
Number of successful extensions: 1242
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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