Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_B19
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    38   0.001
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.2  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   5.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   9.6  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +1

Query: 133 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 312
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 313 GSALSPLLFSLYINDI 360
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 216 AHHTRLLVEPFVPISSRGNAFPAPSRHSRSPARLRPLPVTIQFVYQRYTPVPGDPS 383
           +H + ++  P    +   N  P P  HS  P    PLPV+ Q V  R  PVP  PS
Sbjct: 111 SHPSYMVQSPTSYHACSNNQSPFP--HSHHPPLHNPLPVSCQPVL-RPPPVPQVPS 163


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 243 VRQVVSYDEHEPVWHSHV 190
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 301 GVPQGSALSPLLFSLYINDI 360
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 206 TGSCSSYETTCRTVRSDIESRERVPGPVTSQ--PESRKAPPSPRYYSV 343
           +G   S  ++   V+S+     R  GP  S+  P+     PSP +YSV
Sbjct: 2   SGLLPSLSSSFPLVQSEALGMPRTHGPKPSENDPKEPTCSPSPAFYSV 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,158
Number of Sequences: 5004
Number of extensions: 58960
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)