Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_B19
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 39 0.005
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 37 0.017
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 33 0.20
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 33 0.27
10_06_0145 + 11215895-11216860 29 4.4
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985... 29 4.4
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767... 29 4.4
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 29 4.4
02_02_0298 - 8713660-8714073 29 4.4
12_02_1217 + 27082452-27083593,27085041-27085158 29 5.8
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 28 7.6
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 7.6
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 28 7.6
01_03_0086 - 12316010-12316162,12316626-12316712,12316810-123169... 28 7.6
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 38.7 bits (86), Expect = 0.005
Identities = 27/86 (31%), Positives = 37/86 (43%)
Frame = +1
Query: 133 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 312
D AKAFD V L L G PD + I++ L + G + G+ Q
Sbjct: 42 DFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQ 101
Query: 313 GSALSPLLFSLYINDIPRSPETHLAL 390
G LSP LF L + + R E +L +
Sbjct: 102 GDPLSPYLFILVADVLQRLLERNLQI 127
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 37.1 bits (82), Expect = 0.017
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 124 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 303
L D KAFD + H+ ++ + +MG P + + ++ S S + G G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 304 VPQGSALSPLLFSL 345
V QG LS LLF L
Sbjct: 514 VRQGVPLSLLLFVL 527
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = +1
Query: 100 RKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRS 279
R+ T + D KAFD V + L L G P+ + I+ LS+ + G
Sbjct: 1046 RRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPG 1105
Query: 280 RPRHVTAGVPQGSALSPLLFSLYINDIPR 366
R G+ QG LS LF L + + R
Sbjct: 1106 RWICCKKGLLQGDPLSSYLFILVADVLQR 1134
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 33.1 bits (72), Expect = 0.27
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = +1
Query: 253 RYRVEGTRSRPRHVTAGVPQGSALSPLLFSL---------YINDIPRSPETHLALFADDT 405
R + GT S P G+ QG LSPLLF L +N R+P +L+ADD
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADDA 273
Query: 406 AIYY--SCXKKALL 441
I++ C ++ +L
Sbjct: 274 VIFFKPGCNEEEVL 287
>10_06_0145 + 11215895-11216860
Length = 321
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 203 QTGSCSSYE--TTCRTVRSDIESRERVPGPVTSQPESRKAPPSPR 331
+ G CS E TT +D+ S P P +S + PP+PR
Sbjct: 235 EPGCCSVSEASTTTTADAADVSSTGSSPSPTSSNQAATATPPAPR 279
>05_06_0279 +
26896997-26897457,26898100-26898220,26898310-26898586,
26898735-26898895
Length = 339
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 246 FVPISSRGNAFPAPSRHSRSPARLRPLPVTIQFVYQRYTPV 368
F+P ++ G+A AP+R R+P R R +P T+ R P+
Sbjct: 53 FLPAAA-GSACEAPARKKRTPGRWRRIPRTLPHPCLRKRPM 92
>05_03_0362 -
12973488-12974251,12975346-12975580,12976410-12976738,
12977277-12977404,12977695-12977879,12977972-12978165,
12978239-12978368,12978507-12978566,12979037-12979059,
12979158-12979218,12979677-12979748,12979804-12979924,
12980351-12980415,12980973-12981089,12981970-12982239
Length = 917
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 203 QTGSCSS-YETTCRTVRSDIESRERVPGPVTSQPES 307
Q+GS SS + + +T SD+ES + +PG V P+S
Sbjct: 881 QSGSGSSHFMQSSKTDDSDVESEDSMPGIVDGDPDS 916
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 243 VRQVVSYDEHEPVWHSHVIQFVYQTVVPDFIERLRY 136
V +V Y + HSH+I+ V + F+ER+ Y
Sbjct: 352 VESLVGYSSSDDSCHSHLIEIVETLNIEKFVERIVY 387
>02_02_0298 - 8713660-8714073
Length = 137
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 133 RRRGLLSEWVSACSALVRCAP*GGALDGRTSVWRXNPKLLV 11
R RGLL+ +A A CA G DG WR + + +V
Sbjct: 85 RNRGLLTTAAAAGDACAACAAGAGGGDGADGCWRPSLESIV 125
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 176 YTNCITWECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSP 328
Y ++ C T +CS E V SD + + G + + R PP P
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDLYGGELEEEDSPRPPPPRP 77
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 268 GTRSRPRHVTAGVPQGSALSP 330
G RSRPR AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 133 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 219
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 224 YETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIY 361
Y TT R + + E PG S ESR +PP P Y C S++Y
Sbjct: 225 YSTTSRRYERFV-ALEEAPG---SYDESRFSPPFPYDYLYCGSSLY 266
>01_03_0086 -
12316010-12316162,12316626-12316712,12316810-12316942,
12317057-12317330,12317588-12317714,12317815-12318071,
12319055-12319139
Length = 371
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 240 EPFVPISSRGNAF----PAPSRHSRSPARLRPLPVTI 338
+P+VPI G + P P SRSP R LP+ +
Sbjct: 20 DPYVPIPDPGGNYGRSKPGPPAPSRSPPTSRNLPIAV 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,239,598
Number of Sequences: 37544
Number of extensions: 512038
Number of successful extensions: 1592
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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