Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_B19
(810 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 107 2e-23
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 102 7e-22
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 102 7e-22
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 99 4e-21
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 99 4e-21
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 99 4e-21
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 99 4e-21
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 99 4e-21
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 100 5e-21
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 100 5e-21
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 95 1e-19
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 95 1e-19
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 93 3e-19
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 93 4e-19
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 93 5e-19
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 93 5e-19
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 93 5e-19
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 93 5e-19
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 93 5e-19
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 93 5e-19
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 91 1e-18
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 69 6e-12
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 56 8e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 53 5e-07
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 47 4e-05
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 40 0.005
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 39 0.009
BT003763-1|AAO41442.1| 652|Drosophila melanogaster RE39251p pro... 37 0.028
AY069625-1|AAL39770.1| 268|Drosophila melanogaster LD39545p pro... 37 0.028
AE014296-964|AAN12098.1| 682|Drosophila melanogaster CG10625-PC... 37 0.028
AE014296-963|AAF50773.2| 682|Drosophila melanogaster CG10625-PB... 37 0.028
AE014296-962|AAN12097.1| 268|Drosophila melanogaster CG10625-PD... 37 0.028
AE014296-961|AAN12096.1| 268|Drosophila melanogaster CG10625-PA... 37 0.028
AY122174-1|AAM52686.1| 877|Drosophila melanogaster LD34142p pro... 31 2.5
AE014296-2433|AAF49702.1| 2061|Drosophila melanogaster CG9425-PA... 31 2.5
AE014296-2432|AAS65008.1| 2103|Drosophila melanogaster CG9425-PB... 31 2.5
BT023818-1|AAZ86739.1| 909|Drosophila melanogaster SD18573p pro... 30 4.3
BT021403-1|AAX33551.1| 760|Drosophila melanogaster LD10920p pro... 30 4.3
AY128427-1|AAM75020.1| 558|Drosophila melanogaster GH23001p pro... 30 4.3
AM262815-1|CAK18655.1| 1518|Drosophila melanogaster PP1 interact... 30 4.3
AF083889-1|AAC32397.1| 760|Drosophila melanogaster putative tum... 30 4.3
AE014297-3239|AAO41591.1| 1744|Drosophila melanogaster CG7029-PA... 30 4.3
AE013599-1906|AAF58236.1| 760|Drosophila melanogaster CG10117-P... 30 4.3
AB221351-1|BAE78509.1| 760|Drosophila melanogaster Tout-velu pr... 30 4.3
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 107 bits (257), Expect = 2e-23
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 10/158 (6%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
HS V QVHRLT+HIL + ++ A+F D+ +AFD+VWH+GLI K+ + P
Sbjct: 556 HSTVEQVHRLTKHILQAFDDKEYC--NAVFIDMQQAFDRVWHDGLISKVKKL-FPAPYYG 612
Query: 220 IIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETH------ 381
+++ YL +R F RV + S PR + AGVPQGS L PLL+S++ D+P H
Sbjct: 613 VLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRK 672
Query: 382 --LALFADDTAIYYS--CXKKALLHRRLXTAATTMGQW 483
LA +ADD A+ YS C +A R L TT+ W
Sbjct: 673 ALLATYADDIALLYSSNCCNEAA--RGLQEYLTTLAAW 708
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 102 bits (244), Expect = 7e-22
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Frame = +1
Query: 37 RHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLV 216
+H + QV+R+T I R+ A+F D+A+AFD+VW +GL++K+ + +P
Sbjct: 550 KHGTIEQVNRITSEIRTAFEHREYCT--AIFLDVAQAFDRVWLDGLLFKIIKL-LPQNTH 606
Query: 217 LIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFA 396
+++ YL NR F R + + SR + AGVPQGS L P+L++LY D P + FA
Sbjct: 607 KLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFA 666
Query: 397 DDTAIY--YSCXKK--ALLHRRLXTAATTMGQW 483
DDTAI C K ALL R L + + W
Sbjct: 667 DDTAILSRSKCPIKATALLSRHLTSVERWLADW 699
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 102 bits (244), Expect = 7e-22
Identities = 51/129 (39%), Positives = 77/129 (59%)
Frame = +1
Query: 25 DSXARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVP 204
D A+H + QV+R+T I R+ ALF D+A+AFD+VW +GL++K+ + +P
Sbjct: 87 DFPAKHGAIEQVNRITTEIRTAFEHREYCT--ALFLDVAQAFDRVWLDGLMFKIIQL-LP 143
Query: 205 DRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHL 384
+ +++ YL R F R + S + AGVPQGS L P+L++LY DIP + + +
Sbjct: 144 QNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQLTI 203
Query: 385 ALFADDTAI 411
FADDTAI
Sbjct: 204 FTFADDTAI 212
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 99 bits (238), Expect = 4e-21
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Frame = +1
Query: 37 RHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLV 216
+H + QV+R+T I R+ A+F D+A+AFD+VW +GL++K+ + +P
Sbjct: 550 KHGTIEQVNRITSEIRTAFEHREYCT--AIFLDVAQAFDRVWLDGLLFKIIKL-LPQNTH 606
Query: 217 LIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFA 396
+++ YL N F R + + SR + AGVPQGS L P+L++LY D P + FA
Sbjct: 607 KLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFA 666
Query: 397 DDTAIY--YSCXKK--ALLHRRLXTAATTMGQW 483
DDTAI C K ALL R L + + W
Sbjct: 667 DDTAILSRSKCPIKATALLSRHLTSVERWLADW 699
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 99 bits (238), Expect = 4e-21
Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H HQ+ R+T+ IL + + A F DI +AFD+VWH+GL+YKL + +P L
Sbjct: 156 HGAEHQLARVTQFILKAFDEKDVC--SATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFD 212
Query: 220 IIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 363
++ +YLSNR+F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 213 LLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 261
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 99 bits (238), Expect = 4e-21
Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H HQ+ R+T+ IL + + A F DI +AFD+VWH+GL+YKL + +P L
Sbjct: 603 HGAEHQLARVTQFILKAFDEKDVC--SATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFD 659
Query: 220 IIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 363
++ +YLSNR+F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 660 LLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 708
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 99 bits (238), Expect = 4e-21
Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H HQ+ R+T+ IL + + A F DI +AFD+VWH+GL+YKL + +P L
Sbjct: 603 HGAEHQLARVTQFILKAFDEKDVC--SATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFD 659
Query: 220 IIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 363
++ +YLSNR+F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 660 LLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 708
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 99 bits (238), Expect = 4e-21
Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H HQ+ R+T+ IL + + A F DI +AFD+VWH+GL+YKL + +P L
Sbjct: 603 HGAEHQLARVTQFILKAFDEKDVC--SATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFD 659
Query: 220 IIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 363
++ +YLSNR+F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 660 LLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 708
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 99.5 bits (237), Expect = 5e-21
Identities = 44/99 (44%), Positives = 68/99 (68%)
Frame = +1
Query: 118 GALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVT 297
G + DI AFD VWH+GL++KL +G P L+ I++++L++R F + ++S R +
Sbjct: 604 GLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILN 663
Query: 298 AGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIY 414
AGVPQGS L P LF+++ +DIP++ L+LFADD A+Y
Sbjct: 664 AGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVY 702
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 99.5 bits (237), Expect = 5e-21
Identities = 44/99 (44%), Positives = 68/99 (68%)
Frame = +1
Query: 118 GALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVT 297
G + DI AFD VWH+GL++KL +G P L+ I++++L++R F + ++S R +
Sbjct: 552 GLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILN 611
Query: 298 AGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIY 414
AGVPQGS L P LF+++ +DIP++ L+LFADD A+Y
Sbjct: 612 AGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVY 650
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 94.7 bits (225), Expect = 1e-19
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 8/133 (6%)
Frame = +1
Query: 37 RHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLV 216
+H Q+HR+ L + K GA F DI +AFD+VWH GL+YK + P +L
Sbjct: 556 QHGTPEQLHRVVNFALEAMEN-KEYAVGA-FLDIQQAFDRVWHPGLLYKAKRL-FPPQLY 612
Query: 217 LIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP-RSPETH---- 381
L+++ +L R+F V+G +S + + AGVPQGS L P L+S++ +D+P +P T
Sbjct: 613 LVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEE 672
Query: 382 ---LALFADDTAI 411
+A +ADDTA+
Sbjct: 673 DVLIATYADDTAV 685
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 94.7 bits (225), Expect = 1e-19
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 8/133 (6%)
Frame = +1
Query: 37 RHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLV 216
+H Q+HR+ L + K GA F DI +AFD+VWH GL+YK + P +L
Sbjct: 358 QHGTPEQLHRVVNFALEAMEN-KEYAVGA-FLDIQQAFDRVWHPGLLYKAKRL-FPPQLY 414
Query: 217 LIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP-RSPETH---- 381
L+++ +L R+F V+G +S + + AGVPQGS L P L+S++ +D+P +P T
Sbjct: 415 LVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEE 474
Query: 382 ---LALFADDTAI 411
+A +ADDTA+
Sbjct: 475 DVLIATYADDTAV 487
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 93.5 bits (222), Expect = 3e-19
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 612 HGTEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 668
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L PLL+S++ +D+P SP
Sbjct: 669 ILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTQ 728
Query: 379 HLAL--FADDTAIYYSCXKKALLHRRLXTAATTMGQW 483
+ L +ADDT + S R T W
Sbjct: 729 RIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDW 765
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 93.1 bits (221), Expect = 4e-19
Identities = 47/124 (37%), Positives = 72/124 (58%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H + QV+R+T I R+ A+F D+++AFDKVW +GL++K+ + +P+
Sbjct: 553 HGTIEQVNRITTEIRTAFEYREYCT--AVFLDVSQAFDKVWLDGLMFKI-KISLPESTHK 609
Query: 220 IIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFAD 399
+++ YL +R F R S + AGVPQGS L P L+ +Y DIP + ++ FAD
Sbjct: 610 LLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFAD 669
Query: 400 DTAI 411
DTAI
Sbjct: 670 DTAI 673
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 92.7 bits (220), Expect = 5e-19
Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 600 HGSEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 656
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L PLL+S++ +D+P SP
Sbjct: 657 ILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTE 716
Query: 379 HLAL--FADDTAIYYS 420
+ L +ADDT + S
Sbjct: 717 RIMLSTYADDTIVLSS 732
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 92.7 bits (220), Expect = 5e-19
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 484 HGTEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 540
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L P+L+S++ +D+P SP
Sbjct: 541 ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTE 600
Query: 379 HLAL--FADDTAIYYSCXKKALLHRRLXTAATTMGQW 483
+ L +ADDT + S R T W
Sbjct: 601 RIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDW 637
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 92.7 bits (220), Expect = 5e-19
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 600 HGTEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 656
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L P+L+S++ +D+P SP
Sbjct: 657 ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTE 716
Query: 379 HLAL--FADDTAIYYSCXKKALLHRRLXTAATTMGQW 483
+ L +ADDT + S R T W
Sbjct: 717 RIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDW 753
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 92.7 bits (220), Expect = 5e-19
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 600 HGTEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 656
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L P+L+S++ +D+P SP
Sbjct: 657 ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTE 716
Query: 379 HLAL--FADDTAIYYSCXKKALLHRRLXTAATTMGQW 483
+ L +ADDT + S R T W
Sbjct: 717 RIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDW 753
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 92.7 bits (220), Expect = 5e-19
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 562 HGTEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 618
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L P+L+S++ +D+P SP
Sbjct: 619 ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTE 678
Query: 379 HLAL--FADDTAIYYSCXKKALLHRRLXTAATTMGQW 483
+ L +ADDT + S R T W
Sbjct: 679 RIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDW 715
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 92.7 bits (220), Expect = 5e-19
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Frame = +1
Query: 40 HSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 219
H Q+ R+T+ IL R++ A+F DI++AFD+VWH GL+ KL + +P L +
Sbjct: 600 HGTEQQIARVTQFILEAFERKEYC--SAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYI 656
Query: 220 IIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP------RSPET 378
I+ YL+NR+F + + G SR + AGVPQGS L P+L+S++ +D+P SP
Sbjct: 657 ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTE 716
Query: 379 HLAL--FADDTAIYYSCXKKALLHRRLXTAATTMGQW 483
+ L +ADDT + S R T W
Sbjct: 717 RIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDW 753
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 91.5 bits (217), Expect = 1e-18
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Frame = +1
Query: 34 ARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRL 213
A H V Q+HR+ E IL + ++ +LF DI +AFD+VWH GL K+ +P
Sbjct: 553 AGHCTVEQLHRVVEQILTAYDSKEYC--NSLFLDIREAFDRVWHIGLQLKI-KQTLPAPY 609
Query: 214 VLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSP-----ET 378
+++ YL R F R S +V AGVPQGS L PLL+ LY +D+P+ ++
Sbjct: 610 FGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKS 669
Query: 379 HLALFADDTAIYY 417
LA FADD + Y
Sbjct: 670 MLATFADDVCVTY 682
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 69.3 bits (162), Expect = 6e-12
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Frame = +1
Query: 34 ARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRL 213
+ HS + + R+ L+ + + L D +AFD+V + ++ +L G+ RL
Sbjct: 553 SNHSTMDALLRIQHFASNALSTKNHV--SILATDFERAFDRVGIHAVLCRLERWGIGPRL 610
Query: 214 VLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDI----PRSPETH 381
+I+ +++NRSFR R+ S + G+PQGS LS +LF + I DI R + +
Sbjct: 611 YNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIY 670
Query: 382 LALFADDTAIY 414
++L+ADD I+
Sbjct: 671 ISLYADDAIIF 681
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 55.6 bits (128), Expect = 8e-08
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Frame = +1
Query: 133 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVP 309
D+ AF+ ++ + N+GVPD + +I +Y +R Y E G RS V+AGVP
Sbjct: 557 DVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSH--QVSAGVP 614
Query: 310 QGSALSPLLFSLYINDI-----PRSPETHLALFADDTAIYYSCXKKALLHRRLXTAATTM 474
QGS L P+L+++ + I PR E H FADD AI L A T
Sbjct: 615 QGSVLGPILWNIMYDGILSISKPRGVELH--CFADDVAITAVAKTIPELQDISNVAITAA 672
Query: 475 GQWFREV 495
+W +V
Sbjct: 673 IEWLEKV 679
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 52.8 bits (121), Expect = 5e-07
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Frame = +1
Query: 115 TGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHV 294
T + D ++AFD+V + +I +L +++ I++++SNR RV S P +
Sbjct: 570 TSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPL 629
Query: 295 TAGVPQGSALSPLLFSLYINDIPRSPETHLAL----FADDTAIYYSCXKKALLHRRLXTA 462
G+PQGS +S +LF + N + H + +ADD + + K + L
Sbjct: 630 FNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNL 689
Query: 463 ATTMGQW 483
+ W
Sbjct: 690 FDDIENW 696
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 46.8 bits (106), Expect = 4e-05
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +1
Query: 190 NMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGSALSPLLFSLYINDIPR 366
N P LV IR Y SNR E + RH VT GVPQGS L PLL++ + I R
Sbjct: 14 NFSDPAYLVRFIRSYSSNRVLP--CESSEGVFRHQVTGGVPQGSVLGPLLWNTMYDGILR 71
Query: 367 SP---ETHLALFADDTAI 411
P + + FADD A+
Sbjct: 72 LPLVGRSEIVGFADDVAL 89
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 39.5 bits (88), Expect = 0.005
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Frame = +1
Query: 133 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 312
D++KAFD + H + L G P V +++ +G S GV Q
Sbjct: 482 DVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQ 541
Query: 313 GSALSPLLFSLYINDIPRS-PE----------THLALFADDTAIY 414
G LSP+LF+L ++ + R+ P T+ A FADD ++
Sbjct: 542 GDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLF 586
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 38.7 bits (86), Expect = 0.009
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Frame = +1
Query: 127 FFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAG 303
F D AFD V + + +L ++G R + + + + S R R GT P VT G
Sbjct: 576 FVDFKGAFDNVEWSAALSRLADLGC--REMGLWQSFFSGRRAVIRSSSGTVEVP--VTRG 631
Query: 304 VPQGSALSPLLFSLYINDIPR--SPETHLALFADDTAIYYSCXKKALLHRRLXTAATTMG 477
PQGS P ++ + ++ + + P L+ +ADD + +A+L + + +
Sbjct: 632 CPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVE 691
Query: 478 QWFREV 495
W EV
Sbjct: 692 TWGAEV 697
>BT003763-1|AAO41442.1| 652|Drosophila melanogaster RE39251p
protein.
Length = 652
Score = 37.1 bits (82), Expect = 0.028
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 795 PKXXXGXXRPXGXKAGTIXGPXXXXGPEXHPKXXGGT-PXXFGXXGPP-PXGXXRTSGIG 622
P G P G K T GP GP P G T P +G GPP P G R G
Sbjct: 525 PPGPPGPPGPPGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG 584
Query: 621 P 619
P
Sbjct: 585 P 585
>AY069625-1|AAL39770.1| 268|Drosophila melanogaster LD39545p
protein.
Length = 268
Score = 37.1 bits (82), Expect = 0.028
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 795 PKXXXGXXRPXGXKAGTIXGPXXXXGPEXHPKXXGGT-PXXFGXXGPP-PXGXXRTSGIG 622
P G P G K T GP GP P G T P +G GPP P G R G
Sbjct: 141 PPGPPGPPGPPGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG 200
Query: 621 P 619
P
Sbjct: 201 P 201
>AE014296-964|AAN12098.1| 682|Drosophila melanogaster CG10625-PC,
isoform C protein.
Length = 682
Score = 37.1 bits (82), Expect = 0.028
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 795 PKXXXGXXRPXGXKAGTIXGPXXXXGPEXHPKXXGGT-PXXFGXXGPP-PXGXXRTSGIG 622
P G P G K T GP GP P G T P +G GPP P G R G
Sbjct: 555 PPGPPGPPGPPGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG 614
Query: 621 P 619
P
Sbjct: 615 P 615
>AE014296-963|AAF50773.2| 682|Drosophila melanogaster CG10625-PB,
isoform B protein.
Length = 682
Score = 37.1 bits (82), Expect = 0.028
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 795 PKXXXGXXRPXGXKAGTIXGPXXXXGPEXHPKXXGGT-PXXFGXXGPP-PXGXXRTSGIG 622
P G P G K T GP GP P G T P +G GPP P G R G
Sbjct: 555 PPGPPGPPGPPGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG 614
Query: 621 P 619
P
Sbjct: 615 P 615
>AE014296-962|AAN12097.1| 268|Drosophila melanogaster CG10625-PD,
isoform D protein.
Length = 268
Score = 37.1 bits (82), Expect = 0.028
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 795 PKXXXGXXRPXGXKAGTIXGPXXXXGPEXHPKXXGGT-PXXFGXXGPP-PXGXXRTSGIG 622
P G P G K T GP GP P G T P +G GPP P G R G
Sbjct: 141 PPGPPGPPGPPGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG 200
Query: 621 P 619
P
Sbjct: 201 P 201
>AE014296-961|AAN12096.1| 268|Drosophila melanogaster CG10625-PA,
isoform A protein.
Length = 268
Score = 37.1 bits (82), Expect = 0.028
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 795 PKXXXGXXRPXGXKAGTIXGPXXXXGPEXHPKXXGGT-PXXFGXXGPP-PXGXXRTSGIG 622
P G P G K T GP GP P G T P +G GPP P G R G
Sbjct: 141 PPGPPGPPGPPGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG 200
Query: 621 P 619
P
Sbjct: 201 P 201
>AY122174-1|AAM52686.1| 877|Drosophila melanogaster LD34142p
protein.
Length = 877
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -1
Query: 762 GXKAGTIXGPXXXXGPEXHPKXXGGTPXXFGXXGPPP 652
G GT GP GP H GG G GPPP
Sbjct: 136 GPGPGTGGGPGPGPGPPPHYGGGGGGGGHMGMRGPPP 172
>AE014296-2433|AAF49702.1| 2061|Drosophila melanogaster CG9425-PA,
isoform A protein.
Length = 2061
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -1
Query: 762 GXKAGTIXGPXXXXGPEXHPKXXGGTPXXFGXXGPPP 652
G GT GP GP H GG G GPPP
Sbjct: 1320 GPGPGTGGGPGPGPGPPPHYGGGGGGGGHMGMRGPPP 1356
>AE014296-2432|AAS65008.1| 2103|Drosophila melanogaster CG9425-PB,
isoform B protein.
Length = 2103
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -1
Query: 762 GXKAGTIXGPXXXXGPEXHPKXXGGTPXXFGXXGPPP 652
G GT GP GP H GG G GPPP
Sbjct: 1362 GPGPGTGGGPGPGPGPPPHYGGGGGGGGHMGMRGPPP 1398
>BT023818-1|AAZ86739.1| 909|Drosophila melanogaster SD18573p
protein.
Length = 909
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 197 ECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGPRR 376
E T S S T+ + S+ R R+P PV S P R + P+ + ++T P P R
Sbjct: 753 EAATKSGGSTPTSGNSTGSNSAPRSRIPRPV-SYPAGRSSTPTSSRTAPVLAT--PSPAR 809
Query: 377 P 379
P
Sbjct: 810 P 810
>BT021403-1|AAX33551.1| 760|Drosophila melanogaster LD10920p
protein.
Length = 760
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 291 VTGPGTRSLDSISERTVRQVVSYDEHEPVWH---SHVIQFVYQTVVPDFIE 148
V G T DS+SE VR V S P W+ +H+I +Y PD+ E
Sbjct: 151 VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYAE 201
>AY128427-1|AAM75020.1| 558|Drosophila melanogaster GH23001p
protein.
Length = 558
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 197 ECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGPRR 376
E T S S T+ + S+ R R+P PV S P R + P+ + ++T P P R
Sbjct: 402 EAATKSGGSTPTSGNSTGSNSAPRSRIPRPV-SYPAGRSSTPTSSRTAPVLAT--PSPAR 458
Query: 377 P 379
P
Sbjct: 459 P 459
>AM262815-1|CAK18655.1| 1518|Drosophila melanogaster PP1 interacting
16 protein.
Length = 1518
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 197 ECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGPRR 376
E T S S T+ + S+ R R+P PV S P R + P+ + ++T P P R
Sbjct: 1362 EAATKSGGSTPTSGNSTGSNSAPRSRIPRPV-SYPAGRSSTPTSSRTAPVLAT--PSPAR 1418
Query: 377 P 379
P
Sbjct: 1419 P 1419
>AF083889-1|AAC32397.1| 760|Drosophila melanogaster putative tumor
suppressor homolog protein.
Length = 760
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 291 VTGPGTRSLDSISERTVRQVVSYDEHEPVWH---SHVIQFVYQTVVPDFIE 148
V G T DS+SE VR V S P W+ +H+I +Y PD+ E
Sbjct: 151 VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYAE 201
>AE014297-3239|AAO41591.1| 1744|Drosophila melanogaster CG7029-PA
protein.
Length = 1744
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 197 ECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGPRR 376
E T S S T+ + S+ R R+P PV S P R + P+ + ++T P P R
Sbjct: 1588 EAATKSGGSTPTSGNSTGSNSAPRSRIPRPV-SYPAGRSSTPTSSRTAPVLAT--PSPAR 1644
Query: 377 P 379
P
Sbjct: 1645 P 1645
>AE013599-1906|AAF58236.1| 760|Drosophila melanogaster CG10117-PA
protein.
Length = 760
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 291 VTGPGTRSLDSISERTVRQVVSYDEHEPVWH---SHVIQFVYQTVVPDFIE 148
V G T DS+SE VR V S P W+ +H+I +Y PD+ E
Sbjct: 151 VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYAE 201
>AB221351-1|BAE78509.1| 760|Drosophila melanogaster Tout-velu
protein.
Length = 760
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 291 VTGPGTRSLDSISERTVRQVVSYDEHEPVWH---SHVIQFVYQTVVPDFIE 148
V G T DS+SE VR V S P W+ +H+I +Y PD+ E
Sbjct: 151 VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYAE 201
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,752,916
Number of Sequences: 53049
Number of extensions: 835092
Number of successful extensions: 2366
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2323
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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