Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_B19
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.36 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 142  KAFDKVWHNGLIYKLYNMGVPDRLVLIIRD 231
            KA+ KV  N +I+++Y MG  DR + +  D
Sbjct: 1542 KAYQKVEENEIIFEIYKMG--DRFIGLTSD 1569


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 228 SYDEHEPVWHSHV 190
           SYD  EP W +HV
Sbjct: 414 SYDAQEPAWKTHV 426


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 317 PPSPRYY-SVCISTIYPGPRRPIW 385
           P  P YY ++  S   P P+RPIW
Sbjct: 290 PFYPGYYPTMTYSNGLPFPQRPIW 313


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 317 PPSPRYY-SVCISTIYPGPRRPIW 385
           P  P YY ++  S   P P+RPIW
Sbjct: 290 PFYPGYYPTMTYSNGLPFPQRPIW 313


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 317 PPSPRYYSVCISTIYPGPRRPIW 385
           PP PR      S   PG  RP++
Sbjct: 83  PPHPRLRREAESEAEPGNNRPVY 105


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/42 (26%), Positives = 15/42 (35%)
 Frame = +1

Query: 367  SPETHLALFADDTAIYYSCXKKALLHRRLXTAATTMGQWFRE 492
            S   H  + A D   YY    +    RRL    T    +F +
Sbjct: 941  SDNAHKVVDASDVWCYYGGDARPAYRRRLNVNETVCSDYFSQ 982


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -3

Query: 175 SNRCARLYRTPSLYRRRG-----LLSEWVSACSAL 86
           S +  +LYR  SL +RRG     LLS ++   +AL
Sbjct: 29  SAKLEKLYRASSLQQRRGGLEYFLLSAFLFGANAL 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,970
Number of Sequences: 438
Number of extensions: 5988
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)