Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_B17
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0214 - 15250941-15251181,15251237-15251550                       31   0.85 
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820...    29   3.4  
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    29   3.4  
01_06_1224 - 35508842-35510404                                         29   4.5  
04_01_0041 - 464695-464850,467485-469029                               29   6.0  
01_05_0227 - 19512866-19514983                                         29   6.0  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   7.9  

>07_03_0214 - 15250941-15251181,15251237-15251550
          Length = 184

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = -1

Query: 677 GFNPGANSF*YGVQGIDGNGC*VWGGWCMEFGDLMIGLM*PRSPGEGGLMHKGETANSNA 498
           G   GA    YGV  +  +G  VWGG     G  M  L    +P EG  M + E +   A
Sbjct: 54  GIGSGATVTGYGVPDMGPSGGVVWGGGAAR-GAAMTRLGRLGAPMEGSSMERREVSMGTA 112

Query: 497 RG 492
           RG
Sbjct: 113 RG 114


>03_05_0824 +
           27980191-27980243,27980633-27980671,27980974-27982023,
           27983097-27983262,27983439-27983549,27983637-27983688,
           27984691-27984859,27985604-27985883
          Length = 639

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 402 PSLKIPVTVDL--CWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSR--LHQP 569
           P  KIP  +++  C T+ D T       ++ S+ +ITIG L L+ +    WR R  LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSA-----SSSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274

Query: 570 DHQIPEFHTPTTPD 611
             +I    TP   D
Sbjct: 275 -RRISNGTTPVFDD 287


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +3

Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
           TE  +N V V  L   SS   GY D  + ++   V      +  K+ V +D    TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224

Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
           +  +N+L  P        G  L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249


>01_06_1224 - 35508842-35510404
          Length = 520

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/76 (26%), Positives = 25/76 (32%)
 Frame = +1

Query: 529 IKPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*XEFAPGLKPPXVIRGSISG 708
           + PP        NP     +  H PP    P P +   P   EF     PP V    + G
Sbjct: 33  LSPPLQEVYSLYNPDDPPASETHLPPYAPPPAPVVSELPDDLEFGLHPPPPLVRASELLG 92

Query: 709 FSPPSSLGMAKRGFAP 756
           +    S   A   F P
Sbjct: 93  WEDRPSSSTASSSFLP 108


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 423 TVD 431
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 237 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
           Q   I  +  ++ L       N  TV  + N    + GY+    +N+   +    PSLK 
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256

Query: 417 PVTVDLCWTTADVTVEGVNVLATPSS 494
               D C  T ++ +EG++ L   S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,797,457
Number of Sequences: 37544
Number of extensions: 503237
Number of successful extensions: 1325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)