Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_B14
(809 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 33 0.92
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 33 0.92
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 33 0.92
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 33 0.92
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 33 0.92
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 33 0.92
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 33 0.92
AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein. 32 2.1
Y16282-1|CAA76155.1| 494|Homo sapiens nicotinic acetylcholine r... 31 3.7
U62435-1|AAB40113.1| 494|Homo sapiens nicotinic acetylcholine r... 31 3.7
BC014456-1|AAH14456.1| 494|Homo sapiens cholinergic receptor, n... 31 3.7
AB079251-1|BAC06855.1| 494|Homo sapiens Nicotinic acetylcholine... 31 3.7
AK131450-1|BAD18595.1| 1340|Homo sapiens protein ( Homo sapiens ... 31 4.9
Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine r... 31 6.5
X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine re... 31 6.5
X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine r... 31 6.5
U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine r... 31 6.5
L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine r... 31 6.5
DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor, n... 31 6.5
BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor, n... 31 6.5
AK025593-1|BAB15183.1| 671|Homo sapiens protein ( Homo sapiens ... 31 6.5
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 164
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 165 QNCSMKFGS 173
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 70 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 129
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 130 QNCSMKFGS 138
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 164
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 165 QNCSMKFGS 173
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 164
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 165 QNCSMKFGS 173
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 164
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 165 QNCSMKFGS 173
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 164
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 165 QNCSMKFGS 173
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 33.5 bits (73), Expect = 0.92
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
V SE LW PD+VL NA G + V +NG+ + +M + +
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDR 164
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 165 QNCSMKFGS 173
>AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein.
Length = 1383
Score = 32.3 bits (70), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 429 HGRGEXSPRRWXQPRLAVPRQASTSVPRTPAKCCSPIPPA 310
HG + SP W Q + + P + P P +CCS P A
Sbjct: 256 HGGRDCSPTCWEQGKCSGPAEQEKRGPSFPKECCSQGPTA 295
>Y16282-1|CAA76155.1| 494|Homo sapiens nicotinic acetylcholine
receptor alpha6 subunit precursor protein.
Length = 494
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSXSXIXRLDXXTPISM 491
G T V ++++W+PD+VL N A GD+ + +A + NG + + M
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITWTPPAIFKSSCPM 160
Query: 492 QLDNWXNXXQTCPFKSGS 545
+ + Q C K GS
Sbjct: 161 DITFFPFDHQNCSLKFGS 178
>U62435-1|AAB40113.1| 494|Homo sapiens nicotinic acetylcholine
receptor alpha6 subunit precursor protein.
Length = 494
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSXSXIXRLDXXTPISM 491
G T V ++++W+PD+VL N A GD+ + +A + NG + + M
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITWTPPAIFKSSCPM 160
Query: 492 QLDNWXNXXQTCPFKSGS 545
+ + Q C K GS
Sbjct: 161 DITFFPFDHQNCSLKFGS 178
>BC014456-1|AAH14456.1| 494|Homo sapiens cholinergic receptor,
nicotinic, alpha 6 protein.
Length = 494
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSXSXIXRLDXXTPISM 491
G T V ++++W+PD+VL N A GD+ + +A + NG + + M
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITWTPPAIFKSSCPM 160
Query: 492 QLDNWXNXXQTCPFKSGS 545
+ + Q C K GS
Sbjct: 161 DITFFPFDHQNCSLKFGS 178
>AB079251-1|BAC06855.1| 494|Homo sapiens Nicotinic acetylcholine
receptor alpha 6 protein.
Length = 494
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSXSXIXRLDXXTPISM 491
G T V ++++W+PD+VL N A GD+ + +A + NG + + M
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITWTPPAIFKSSCPM 160
Query: 492 QLDNWXNXXQTCPFKSGS 545
+ + Q C K GS
Sbjct: 161 DITFFPFDHQNCSLKFGS 178
>AK131450-1|BAD18595.1| 1340|Homo sapiens protein ( Homo sapiens cDNA
FLJ16598 fis, clone TESTI4006473, weakly similar to
ATP-dependent RNA helicase A. ).
Length = 1340
Score = 31.1 bits (67), Expect = 4.9
Identities = 22/82 (26%), Positives = 29/82 (35%)
Frame = -3
Query: 555 WAS*NRT*KGKSAXXWXNCLTA*KLEXXCPSXLXRXRSRY*IHGRGEXSPRRWXQPRLAV 376
W S N C TA ++ PS +Y RG P+R + R
Sbjct: 1103 WRSNNSRKSSADTEFSDECTTAERVLMKSPSPALHPPQKY--KDRGILHPKRGTEDRSDQ 1160
Query: 375 PRQASTSVPRTPAKCCSPIPPA 310
ST P+ C SP PP+
Sbjct: 1161 SSLKSTDSSSYPSPCASPSPPS 1182
>Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 172
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 173 QNCTMKFGS 181
>X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine
receptor alpha-4 subunit protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 172
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 173 QNCTMKFGS 181
>X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine
receptor protein.
Length = 602
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 88 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 147
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 148 QNCTMKFGS 156
>U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 172
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 173 QNCTMKFGS 181
>L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha 4 subunit protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 172
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 173 QNCTMKFGS 181
>DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 4 protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 172
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 173 QNCTMKFGS 181
>BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha 4 protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSXSXIXRLDXXTPISMQLDNWXNXX 518
+ SE +WRPD+VL NA A + +A + ++G + S+ + +
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQ 172
Query: 519 QTCPFKSGS 545
Q C K GS
Sbjct: 173 QNCTMKFGS 181
>AK025593-1|BAB15183.1| 671|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21940 fis, clone HEP04512. ).
Length = 671
Score = 30.7 bits (66), Expect = 6.5
Identities = 22/82 (26%), Positives = 29/82 (35%)
Frame = -3
Query: 555 WAS*NRT*KGKSAXXWXNCLTA*KLEXXCPSXLXRXRSRY*IHGRGEXSPRRWXQPRLAV 376
W S N C TA ++ PS +Y RG P+R + R
Sbjct: 434 WRSNNSRKSSADTEFSDECTTAERVLMKSPSPALHPPRKY--KDRGILHPKRGTEDRSDQ 491
Query: 375 PRQASTSVPRTPAKCCSPIPPA 310
ST P+ C SP PP+
Sbjct: 492 SSLKSTDSSSYPSPCASPSPPS 513
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,928,303
Number of Sequences: 237096
Number of extensions: 1731500
Number of successful extensions: 5054
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5000
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -