Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_B10
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.48
07_03_1282 - 25447736-25447813,25448670-25448744,25449212-254492... 31 0.84
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.9
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.4
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 4.5
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.5
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381... 29 5.9
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 28 7.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.8
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 28 7.8
03_01_0515 - 3864796-3865425 28 7.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.8
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 309 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1282 -
25447736-25447813,25448670-25448744,25449212-25449281,
25449515-25449747,25451210-25451719
Length = 321
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 644 PPXPPXPGXAPPXXDPSHPKXPDSNILY 561
PP P P APP DP P P +N+L+
Sbjct: 138 PPAAPPPVVAPPEADPESPNFP-TNVLF 164
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 207 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 323
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 133
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 644 PPXPPXPGXAPPXXDPSHPKXP 579
PP PP P PP P HP P
Sbjct: 1157 PPPPPPPLPPPPPVAPFHPPGP 1178
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 644 PPXPPXPGXAPPXXDPSHPKXP 579
PP PP P APP P P P
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPP 347
>04_04_0760 -
27837170-27837328,27837441-27837504,27837812-27838160,
27838906-27838960,27839489-27839821
Length = 319
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 644 PPXPPXPGXAPPXXDPSHPKXPDSN 570
PP PP P + P DP P P ++
Sbjct: 10 PPPPPPPSESTPTSDPKPPPPPPTS 34
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 573 EHTVYSFVNHRNPISSLLCILEPEL 499
E T+ S VNHRN + L C LE E+
Sbjct: 101 EVTILSQVNHRNVVKLLGCCLETEV 125
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 94 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 249
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = -3
Query: 665 NHCQXXGPPXPPXPGXA---PPXXDPSHPK 585
+H PP PP P A PP P HPK
Sbjct: 49 HHALPHPPPPPPPPQPAKEPPPPTKPKHPK 78
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 644 PPXPPXPGXAPPXXDPSHP 588
PP PP P +PP PS P
Sbjct: 89 PPPPPPPAASPPPPPPSPP 107
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 336 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 169
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,990,102
Number of Sequences: 37544
Number of extensions: 530791
Number of successful extensions: 2480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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