Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_B08
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 274 7e-74
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 272 3e-73
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 3.2
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.5
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.3
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.3
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.3
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 9.6
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 274 bits (671), Expect = 7e-74
Identities = 128/220 (58%), Positives = 162/220 (73%)
Frame = +2
Query: 53 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 232
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 233 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 412
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 413 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 592
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 593 LLAREVLRLPGVLPRDQRWDVVVDLFFYPWTLXXSEKDEQ 712
LLAR VL++ G + +WDV+VDLFFY E++E+
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 272 bits (666), Expect = 3e-73
Identities = 126/211 (59%), Positives = 157/211 (74%)
Frame = +2
Query: 86 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 265
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 266 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 445
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 446 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLPG 625
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++ G
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 626 VLPRDQRWDVVVDLFFYPWTLXXSEKDEQXA 718
+ +WDV+VDLFFY E++E+ A
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQEEEEA 222
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = -1
Query: 669 NKSTTTSQRWSRGSTPGSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITG 490
N + T S+ G+ +T+ +N+ + + + A S + S + G
Sbjct: 373 NSGSGTMSGIDAPSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIG 432
Query: 489 MLTYEASVMG*WSCAGSNTIKRRGSRNAAW 400
+ + S G WS AGSNT G+ ++ W
Sbjct: 433 VASNAGSSSGSWSNAGSNTGTLSGAGSSNW 462
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 153 TFSAPRWVVAASILVTSSSLRASTSNP 73
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 331 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 438
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 335 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 180
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 160 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 267
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 106 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 285
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 286 VRHLITALRSACCTEVCR 339
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 163 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 342
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 343 HRC 351
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 196 WYPCDQLASYLGKTCSGCSCCRSHREP 276
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,527,527
Number of Sequences: 37544
Number of extensions: 585405
Number of successful extensions: 1523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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