Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_B04
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.39 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   4.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.5  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 283 VRVHRANTGRSSNELDRQTTELERR 357
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 207 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 109
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +2

Query: 755 PPRXXXPXXXXXXPVPRXXXXXPPPAPFXXXXXPPXXXPPXXSRRPPKXP 904
           PP    P      P P      P  AP      PP   P    + PP  P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +2

Query: 758 PRXXXPXXXXXXPVPRXXXXXPPPAPFXXXXXPPXXXPPXXSRRPPKXP 904
           P    P      P P      PPPAP      PP   P      PP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPV-PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 465 RGERSPRRVVAAAFSSTTSGLHKRSEDTSQVLQPHSPAFQLSRLSIQ 325
           RG RS R    +  SS++    K+S  TSQ+++  SP+ + + L +Q
Sbjct: 12  RGNRSKRHQNLSDASSSSGSFSKKSS-TSQLVRTGSPSVEPTALYLQ 57


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 473  YTGAESVVPGGWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 342
            Y  ++ V   G L P      +A+T+   TP    +PTP  +++
Sbjct: 915  YNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTPTPTTTSA 958


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 89   MSTTYIILLPFLLTCAIASAAECENATSLS 178
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,101
Number of Sequences: 5004
Number of extensions: 51426
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)