Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_A08
(842 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 32 0.008
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 29 0.054
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.16
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.16
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.38
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.50
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.66
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.66
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.66
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.66
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.66
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.66
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.66
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.66
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.66
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.2
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 22 6.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.2
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 4e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 99 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 263
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 264 MNWIDKRLSWNA 299
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 105 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 272
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 273 IDKRLSWNAG 302
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.9 bits (69), Expect = 0.008
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Frame = +3
Query: 45 ILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP------DSKIVVNLTLHL 206
+L L FLL + + + ++D++L YD P D +V + L +
Sbjct: 8 LLVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATDGPAIVRVNLFV 67
Query: 207 RH-ANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHL 323
R A I + + +Q + W+D+RL +N G L++L
Sbjct: 68 RSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYL 107
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.1 bits (62), Expect = 0.054
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Frame = +3
Query: 45 ILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP------DSKIVVNLTLHL 206
+L L FLL + + + ++D++L YD P D VV + + +
Sbjct: 8 LLVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATDGPAVVRVNIFV 67
Query: 207 RH-ANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHL 323
R + I + +Q + W+D+RL +N G L++L
Sbjct: 68 RSISKIDDVTMEYSVQLTFREQWLDERLRFNDFGGRLKYL 107
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 310 GCSTWLVSSERLWRPDVVLLNAA 378
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
Score = 22.2 bits (45), Expect = 6.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 307 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 215
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
Score = 22.2 bits (45), Expect = 6.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 307 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 215
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.5 bits (58), Expect = 0.16
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 304 EWGCSTWL-VSSERLWRPDVVLLNAAAXXXG 393
E+G T L V SE +W PD+VL N A G
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYG 118
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.38
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 310 GCSTWLVSSERLWRPDVVLLNAA 378
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.50
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 177 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNA---GGVGLQHL 323
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
Score = 24.2 bits (50), Expect = 1.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +1
Query: 337 ERLWRPDVVLLNAA 378
+++W+PD+VL N A
Sbjct: 106 DKVWKPDIVLFNNA 119
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 216 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 311
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.6 bits (51), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
++ +LW+PD+++ N+A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.66
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
+ RLW+PDV++ N+A
Sbjct: 100 IPPHRLWKPDVLMYNSA 116
Score = 22.2 bits (45), Expect = 6.2
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +3
Query: 78 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 242
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 243 RIQADLQMNWIDKRLSWNAGGVG 311
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 328 VSSERLWRPDVVLLNAA 378
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 337 ERLWRPDVVLLN 372
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +3
Query: 177 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHLAGVL 335
+ ++N L + + + ++ + D + N + + S AGGV + AG++
Sbjct: 239 RAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMM 291
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 6.2
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +3
Query: 681 PXPXXXPPPGEXGSPXRXXGAPXPG 755
P P P + GSP P PG
Sbjct: 25 PSPHQSPQAPQRGSPPNPSQGPPPG 49
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,977
Number of Sequences: 438
Number of extensions: 4225
Number of successful extensions: 42
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -