Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_P22
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.83 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.5  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   4.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   7.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.8  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   7.8  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 475 PQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 299
           P +KK TLDD D P+ S   D       S +         ++E +    N+ +S P  S
Sbjct: 94  PSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTNKNESLPGTS 152


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -2

Query: 484 SIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQT---QS 314
           SI  +     L+     S++   +  P+  A +  P     ++  E  A+ N  T   + 
Sbjct: 552 SISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKP 611

Query: 313 QPK--KSQRSTEAFPALSATAHSPAAPP 236
           QPK  K  +    F A S  A  PA+PP
Sbjct: 612 QPKDTKGSKLGNTFVAPSPAASLPASPP 639


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 331 NNQTQSQPKKSQRSTEAFPALSATAHS 251
           +NQT   P    +STE  P  S T HS
Sbjct: 269 SNQTFMAPASGLQSTEEIPQFSKTGHS 295


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -2

Query: 481 IPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKK 302
           +P Q  K  +  +  PSL    +  P  G+        +  NS +   ++N+QTQS   +
Sbjct: 367 VPSQFYKQKVVQNSPPSLLSTDNKIPESGSDHPS----SQDNSSKASLVENSQTQSSTPR 422

Query: 301 SQRSTEAFPALSATAHS 251
               T   P ++   HS
Sbjct: 423 KPLPTTTSPKVNPEPHS 439


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 301 SQRSTEAFPALSATAHSPAAPPQWITVS 218
           S R  E  P+LSA A  P  PP   TVS
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVS 265


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 358 NSQEMQALKNNQTQ--SQPKKSQRSTEAFPALSATAHSPAAPPQWIT 224
           + QE+ ++  N+ Q  S P     S E   +L+A AH+P     W T
Sbjct: 304 DEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQT 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,192
Number of Sequences: 5004
Number of extensions: 44451
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)