Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_P21
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 155 5e-38
07_01_0103 - 779554-780434,780542-780791 35 0.085
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 30 2.4
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 3.2
03_05_0425 - 24116049-24116175,24117055-24117377 29 5.6
01_05_0118 + 18335065-18335553 29 5.6
07_03_0361 + 17215312-17216217 28 7.4
01_06_0695 - 31292622-31293317 28 7.4
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 9.7
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 155 bits (375), Expect = 5e-38
Identities = 69/110 (62%), Positives = 89/110 (80%)
Frame = -2
Query: 409 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 230
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 229 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 80
+ LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+ F R + P+
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109
>07_01_0103 - 779554-780434,780542-780791
Length = 376
Score = 34.7 bits (76), Expect = 0.085
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +2
Query: 293 ELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRRITWRRAESQQ 472
E + L+ W P A+ S + +LGA I+ T +V+N +G+ R + RRA + Q
Sbjct: 107 EEYLQLLRWSLPNMSRAAASGSCC--LLGA--ISGDTLYVAN--AGDSRAVLGRRAAAGQ 160
Query: 473 IAARRCSTEHN 505
A R STEHN
Sbjct: 161 TVAERLSTEHN 171
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 495 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 623
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -2
Query: 454 APGDSSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARC---VPKDKAIKKFVIR 284
A GDSS S+V +R+RR G RGH+ V C + + V + ++
Sbjct: 2620 ASGDSSTSNSSKVLETSRRRRIEGPMHVLRGHLGEVTCCSVSSALGLVASSSSTSGVLLH 2679
Query: 283 NIVEAAAVRDINDASVYPM 227
N+ +R ++ + M
Sbjct: 2680 NLRTGRLIRKLDKQEAHLM 2698
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +3
Query: 429 VNKDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 608
V++ +SPG L R HD +L KSST + R E SR +K
Sbjct: 730 VSEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRK 786
Query: 609 TDSID 623
T+S++
Sbjct: 787 TESVE 791
>03_05_0425 - 24116049-24116175,24117055-24117377
Length = 149
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 475 DLLRLSPAPGDSSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCAR 326
DLL S P SSL TG RN T + R + G+G + ++ C C R
Sbjct: 25 DLLYSSSLPSLSSLSTGK--RNKTGRAERDVRGE-GKGGISSLLCICCLR 71
>01_05_0118 + 18335065-18335553
Length = 162
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 721 APRVGGXKQXDFTSRVSHSKRETRRRSPFGSR 626
AP GG ++ + ++ K T RR+ FG+R
Sbjct: 28 APAAGGTREPEHARLIARRKESTYRRTAFGNR 59
>07_03_0361 + 17215312-17216217
Length = 301
Score = 28.3 bits (60), Expect = 7.4
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = -2
Query: 496 GRAASCCDLLRLSPAPGDSSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 317
GR+ + L R + +G+E T K++ GG G G + V+ +
Sbjct: 29 GRSKTARFLRRRRRGGAVRAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDG 85
Query: 316 KDKAIKKFVIRNIVEAAAVRDINDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSKK 140
+A K+ ++ +VE AA +N + +YP M +L + + + + S R ++
Sbjct: 86 ALRAAKERLV--VVEFAASHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRR 143
Query: 139 D 137
+
Sbjct: 144 E 144
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 447 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 581
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3
Query: 438 DESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS 617
DESP A S R PS RQ++++ D R + E P V K
Sbjct: 496 DESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSKLEGE 551
Query: 618 IDLRDPNGL----RRRVSRFECETRLVKSHCLXPPT 713
+ PN VSR E ET+ K + + P+
Sbjct: 552 TTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMPS 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,376,780
Number of Sequences: 37544
Number of extensions: 435022
Number of successful extensions: 1356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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