Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_P19
(1051 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.051
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.47
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.62
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.4
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 7.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.051
Identities = 23/91 (25%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Frame = +3
Query: 612 PPPPRXGGGXXAXRRXXXXXXXXXTPTPAPP-PXPXXPXPXXXXXXGXXSXAAXXXXAPX 788
PP P+ + P+ APP P P P G AP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 789 XPAPSXXPPSXPXPXISPSXSXTXSXXXPSP 881
PAPS PP +P S P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 31.1 bits (67), Expect = 0.27
Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Frame = +3
Query: 612 PPPPRXGGGXXAXRRXXXXXXXXXTPTPAPPPXPXXPXPXXXXXXGXXSXAA-----XXX 776
PP P+ G + PAP P P P S AA
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV 1109
Query: 777 XAPXXPAPSXXPPSXPXPXISPSXSXTXSXXXPSP 881
P PAPS PP P P ++ S P P
Sbjct: 1110 AVPPVPAPSGAPP-VPKPSVAAPPVPVPSGAPPVP 1143
Score = 31.1 bits (67), Expect = 0.27
Identities = 24/91 (26%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Frame = +3
Query: 612 PPPPRXGGGXXAXRRXXXXXXXXXTPTPAPP-PXPXXPXPXXXXXXGXXSXAAXXXXAPX 788
PP P G + P+ APP P P P G AP
Sbjct: 1112 PPVPAPSGAPPVPK-PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Query: 789 XPAPSXXPPSXPXPXISPSXSXTXSXXXPSP 881
PAPS P P P S P P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 30.3 bits (65), Expect = 0.47
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +3
Query: 687 PTPAPPPXPXXPXPXXXXXXGXXSXAAXXXXAPXXPAPSXXPPSXPXPXISP 842
P P P P P P S A P PAPS PS P P +P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGA-PSAPPPVPAPSSEIPSIPAPSGAP 1083
Score = 29.9 bits (64), Expect = 0.62
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +3
Query: 693 PAPPPXPXXPXPXXXXXXGXXSXAAXXXXAPXXPAPSXXPPSXPXPXIS-PSXSXTXSXX 869
P PPP P P G AP PAPS PS P S PS S
Sbjct: 1209 PVPPPSTAPPVPTPSA--GLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNAS-- 1264
Query: 870 XPSP 881
PSP
Sbjct: 1265 -PSP 1267
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +3
Query: 687 PTPAPPPXPXXPXPXXXXXXGXXSXAAXXXXAPXXPAPSXXPPSXPXPXISP 842
P P P P P A P PAPS PP I P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = +3
Query: 696 APP-PXPXXPXPXXXXXXGXXSXAAXXXXAPXXPAPSXXPPSXPXPXISPSXSXTXSXXX 872
APP P P P AP P PS P P P +P +
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 873 PSP 881
P P
Sbjct: 1228 PVP 1230
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.47
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +3
Query: 687 PTPAPPPXPXXPXPXXXXXXGXXSXAAXXXXAPXXPAPSXXPPSXPXP 830
PTP PPP P P A AP P P+ PS P P
Sbjct: 1705 PTPPPPPMSVPPPP------SAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.5 bits (58), Expect = 3.3
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = +1
Query: 640 GGRXAXXPXXXPPXXP----PXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPP 807
GG P PP P P + P P P P + PP PPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP---MPAGPPSA--PPP 1733
Query: 808 PXXHXPSPXSPXPXPRXXL 864
P +P P P R L
Sbjct: 1734 PLPASSAPSVPNPGDRSAL 1752
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 757 PSRXLXXXPPXXLRPPPPXXHXPSPXSPXPXPRXXLP 867
P PP + PPP P P P P LP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +3
Query: 687 PTPAPPPXPXXPXPXXXXXXGXXSXAAXXXXAPXXPAP-SXXPPSXPXPXISPSXSXTXS 863
P PP P G + A AP PAP S PP+ P + PS + +
Sbjct: 1444 PQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPV-PSMIPSVA 1502
Query: 864 XXXPS 878
PS
Sbjct: 1503 QQPPS 1507
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.62
Identities = 29/127 (22%), Positives = 30/127 (23%), Gaps = 2/127 (1%)
Frame = -3
Query: 647 RPPPPXXPXXGGXGXXPXXXXXXGRXXPPPPXXXXFLXXKKXXXXXXXXXGAPPLFY*XP 468
RPPPP P G P PPPP PP P
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP----PP 365
Query: 467 PXPXXXXXLXXPPXXXXGGGGXFLXGXXXXPP--PKXXGPXXKXLGGGGXXFXXPPPXPP 294
P PP + PP P P LG P P PP
Sbjct: 366 PRSAPSTGRQPPPL----SSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Query: 293 RXXXXXP 273
P
Sbjct: 422 SLPPSAP 428
Score = 27.5 bits (58), Expect = 3.3
Identities = 19/92 (20%), Positives = 22/92 (23%)
Frame = +3
Query: 606 PXPPPPRXGGGXXAXRRXXXXXXXXXTPTPAPPPXPXXPXPXXXXXXGXXSXAAXXXXAP 785
P PPP G A P P PP P P P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 786 XXPAPSXXPPSXPXPXISPSXSXTXSXXXPSP 881
P+ PP +P P+P
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 644 PPPPXXPXXGGXGXXPXXXXXXGRXXPPPP 555
P PP P GG P G PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 572 PVXXXXXXXGXPPPPPXXARXGXXGGPPXXXP 667
PV G PPPPP G PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 208 PP--PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 262
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 221 PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 275
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 234 PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 288
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 247 PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 301
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 260 PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 314
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 273 PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 327
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +1
Query: 673 PPXXPPXRXXPPRPXXPXXLXXXXXGXGPSRXLXXXPPXXLRPPPPXXHXPSPXSPXP 846
PP PP P P + P + P + PPPP H P P P
Sbjct: 286 PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-PPPPMHHEPGEHMPPP 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,441
Number of Sequences: 5004
Number of extensions: 28870
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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