Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_P17
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 461 PPRGXXXPPPPPXXGXKKKKKXXXPPPXPXXXXXPPPP 574
           PP+G   PPPPP        +   P         PP P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +2

Query: 482 PPPPPX--XGXKKKKKXXXPPPXPXXXXXPPPP 574
           PPPPP              PPP P     PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 482 PPPPPXXGXKKKKKXXXPPPXP 547
           PPPPP  G         PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +1

Query: 460 PPPGXXXXPPPPXXGXKKKKKXXXPPXXPXXXXXPPPPP 576
           P P     P PP            PP        PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 PPPPPXXGXKKKKKXXXP 535
           PPPPP  G  KK+K   P
Sbjct: 24  PPPPPPPGYVKKRKNKTP 41



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 482 PPPPPXXGXKKKKKXXXPPP 541
           PPPPP  G +   +   PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 464  PRGXXXPPPPPXXGXKKKKKXXXPPPXPXXXXXPPPP 574
            P     P PPP       K     PP P     PP P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,130
Number of Sequences: 5004
Number of extensions: 20856
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)