Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_P13
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 211 1e-55
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 209 4e-55
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.6
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 211 bits (515), Expect = 1e-55
Identities = 103/160 (64%), Positives = 117/160 (73%)
Frame = -3
Query: 806 KXXXAARAXVAIEXPXXXXVISSRPFGQRAVLKFAAHTGVTXIAXRFTPGAFTNQIQAAF 627
K AAR IE P VISSRP+G RAVLKFAAHTG T IA RFTPG FTN I +
Sbjct: 60 KLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179
Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 209 bits (510), Expect = 4e-55
Identities = 101/162 (62%), Positives = 117/162 (72%)
Frame = -3
Query: 806 KXXXAARAXVAIEXPXXXXVISSRPFGQRAVLKFAAHTGVTXIAXRFTPGAFTNQIQAAF 627
K AAR IE P V+S+R +G RAVLKFAAHTG T IA RFTPG FTN I +
Sbjct: 59 KLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178
Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 620 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 441
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 440 AR 435
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 570 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETXRNXRNTGVRGKLQYSTLTEGP 737
S GL L R + E F + +S + W T + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,452
Number of Sequences: 5004
Number of extensions: 55581
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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