Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_P12
         (807 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05561-1|CAA29075.1|  944|Homo sapiens protein ( Human mRNA for ...    31   6.5  
AY898961-1|AAX84028.1|  540|Homo sapiens type XXIII collagen pro...    30   8.6  
AY158895-1|AAO18361.1|  540|Homo sapiens alpha 1 type XXIII coll...    30   8.6  
AL137461-1|CAB70749.1|  201|Homo sapiens hypothetical protein pr...    30   8.6  

>X05561-1|CAA29075.1|  944|Homo sapiens protein ( Human mRNA for
           alpha-1 chain of collagen IV N-terminus. ).
          Length = 944

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 20/69 (28%), Positives = 23/69 (33%)
 Frame = -2

Query: 746 GXCPRXGEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPP 567
           G     GE   PG  G            E+G PG  G R  PG      +    G P PP
Sbjct: 317 GPAGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGL---PGQPGPP 373

Query: 566 AIDQPXXXG 540
            +  P   G
Sbjct: 374 GLPVPGQAG 382


>AY898961-1|AAX84028.1|  540|Homo sapiens type XXIII collagen
           protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 19/63 (30%), Positives = 23/63 (36%)
 Frame = -2

Query: 728 GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAIDQPX 549
           GE   PG+ G            ++   G  G R  PG      V    G P PP +DQP 
Sbjct: 469 GEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKG---VKGQKGEPGPPGLDQPC 525

Query: 548 XXG 540
             G
Sbjct: 526 PVG 528


>AY158895-1|AAO18361.1|  540|Homo sapiens alpha 1 type XXIII
           collagen protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 19/63 (30%), Positives = 23/63 (36%)
 Frame = -2

Query: 728 GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAIDQPX 549
           GE   PG+ G            ++   G  G R  PG      V    G P PP +DQP 
Sbjct: 469 GEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKG---VKGQKGEPGPPGLDQPC 525

Query: 548 XXG 540
             G
Sbjct: 526 PVG 528


>AL137461-1|CAB70749.1|  201|Homo sapiens hypothetical protein
           protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 19/63 (30%), Positives = 23/63 (36%)
 Frame = -2

Query: 728 GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAIDQPX 549
           GE   PG+ G            ++   G  G R  PG      V    G P PP +DQP 
Sbjct: 130 GEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKG---VKGQKGEPGPPGLDQPC 186

Query: 548 XXG 540
             G
Sbjct: 187 PVG 189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,463,000
Number of Sequences: 237096
Number of extensions: 1239632
Number of successful extensions: 5132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4969
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)