Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_P12
(807 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 3.0
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 3.0
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 9.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 9.0
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 9.0
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 9.0
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -2
Query: 728 GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAID 558
GE PGQ G G E G PG G R PG G P P ++
Sbjct: 1041 GEPGSPGQYGMPGLPG---GPGESGLPGYPGERGLPGLDGKRGHDGLPGAPGVPGVE 1094
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -2
Query: 728 GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAID 558
GE PGQ G G E G PG G R PG G P P ++
Sbjct: 1298 GEPGSPGQYGMPGLPG---GPGESGLPGYPGERGLPGLDGKRGHDGLPGAPGVPGVE 1351
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -2
Query: 728 GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAID 558
GE PGQ G G E G PG G R PG G P P ++
Sbjct: 1297 GEPGSPGQYGMPGLPG---GPGESGLPGYPGERGLPGLDGKRGHDGLPGAPGVPGVE 1350
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = -2
Query: 740 CPRX--GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPP 567
CP+ G PG G PG G R PG G P P
Sbjct: 150 CPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTP 209
Query: 566 AIDQPXXXG 540
AI +P G
Sbjct: 210 AISEPLTPG 218
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -2
Query: 713 PGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPP 567
PG G G PG G + APG V G P PP
Sbjct: 223 PGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPP 271
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = -2
Query: 740 CPRX--GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPP 567
CP+ G PG G PG G R PG G P P
Sbjct: 145 CPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTP 204
Query: 566 AIDQPXXXG 540
AI +P G
Sbjct: 205 AISEPLTPG 213
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = -2
Query: 740 CPRX--GEXQGPGQXGXXXXGXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPP 567
CP+ G PG G PG G R PG G P P
Sbjct: 145 CPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTP 204
Query: 566 AIDQPXXXG 540
AI +P G
Sbjct: 205 AISEPLTPG 213
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -2
Query: 713 PGQXGXXXX-GXXXKGXSEKGXPGXXGGRPAPGXXXXXXVXXFXGXPXPPAIDQP 552
PGQ G G + S G PG G + PG G P PP P
Sbjct: 205 PGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPPGPSGAPGAPGGPGYPGPPGQKGP 259
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +1
Query: 565 AGGXGXPXKXXTXXXXXXPGAGRPPXXPGXPFSXXPLXXFPXXXXPXCPGP 717
AG G P PG PP PG P + P PGP
Sbjct: 216 AGATGAPGDDGAPGRDGQPGQSGPPGPPGPPGNVGEAGPPGKPGQPGLPGP 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,889
Number of Sequences: 27780
Number of extensions: 162751
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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