Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_P09
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0396 + 18577574-18578056,18578094-18578723                       30   2.5  
06_03_1478 - 30420097-30420651                                         28   7.5  
06_03_0009 + 15350387-15350622,15351122-15351363,15351484-153516...    28   7.5  
11_01_0777 + 6494104-6494445,6494563-6495528,6495576-6495743           28   9.9  
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639...    28   9.9  
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937           28   9.9  
02_03_0330 + 17823726-17824068,17824307-17825340                       28   9.9  

>12_02_0396 + 18577574-18578056,18578094-18578723
          Length = 370

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 581 LAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHV 405
           L +G P F+  V  + D+G+ SIR H+    E+ F+  +R +   +V    Y PNP ++
Sbjct: 231 LILGRP-FLSTVGANIDVGMGSIRFHINRKEEK-FEFQLRTEQCSMV-RIKYGPNPQNI 286


>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 750 GKFYPMICXRSKCPFGTRXHFTNLHKARHDLRE 652
           GK Y  +C R K PF TR      H+A H  ++
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGG-HRASHSTKK 134


>06_03_0009 +
           15350387-15350622,15351122-15351363,15351484-15351648,
           15352101-15352198,15352210-15352590
          Length = 373

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 581 LAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHV 405
           L +G P F+     + D+G +SIR H+    E++  +      +  +    Y PNP ++
Sbjct: 9   LILGCP-FLSTAGANIDMGTQSIRFHINGKEEKF--EIQPRTEQCSMLRIKYGPNPQNI 64


>11_01_0777 + 6494104-6494445,6494563-6495528,6495576-6495743
          Length = 491

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 581 LAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHV 405
           L +G P F+  V  + D+G  SIR H+    E++  +      +  +    Y PNP ++
Sbjct: 368 LILGRP-FLSTVGANIDVGTGSIRLHINGKEEKF--EFQPRTEQCSMVRIKYGPNPQNI 423


>07_03_0034 -
           12663290-12663355,12663437-12663566,12663903-12663990,
           12664106-12664178,12666144-12666248,12667610-12667732,
           12667821-12667897,12668877-12669006
          Length = 263

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 129 GARAVVSKSHPSWLSICSPTCPGEAGKASGPPVILQ 22
           G +A +S   P W S  SP  PGEA       V+ Q
Sbjct: 22  GEQAGISAVIPGWFSEISPMWPGEAHSLKVEKVLFQ 57


>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
          Length = 860

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 449 LIVAAADYSPNPDHVGASHRRRPRHVLT 366
           L   AAD +P P  +GA  RR PR V T
Sbjct: 12  LATGAADQAPAPAALGALRRRLPRVVTT 39


>02_03_0330 + 17823726-17824068,17824307-17825340
          Length = 458

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -2

Query: 560 FVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHVGASHRRRP 381
           F+     + D+G  SIR H+    ER+  +      +  +    Y PNP ++      RP
Sbjct: 377 FLSTTGANIDVGTGSIRFHINGKEERF--EFQPRTEQCSMVRIKYGPNPQNIQVVEVERP 434

Query: 380 R 378
           +
Sbjct: 435 K 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,781,198
Number of Sequences: 37544
Number of extensions: 385959
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)