Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_P09
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    29   5.1  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 422 PNPDHVGASHRRRPRHVLTDPSD 354
           PN DH+G +H RR R+   DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 422 PNPDHVGASHRRRPRHVLTDPSD 354
           PN DH G +HRR+  H   DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -2

Query: 422 PNPDHVGASHRRRPRHVLTDPSD 354
           PN DH G +HRRR R    DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308


>Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical
           protein T04C10.2b protein.
          Length = 469

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 554 RNVDLHDDLGLESIRKHMKSVSERYFD--KAMRHDNRLIVAAADYSPN-PDHVGASHRRR 384
           ++V+ + D GL +IR+  K ++    D  +      R I+    +  N P  VGA  RR 
Sbjct: 110 QHVEDNRDQGL-NIREKAKQITSLLSDDERLKNERTRFILTRNKFKQNNPGPVGAESRRS 168

Query: 383 PRHVLTDPS-DP 351
            RH +TD S DP
Sbjct: 169 NRHHVTDASLDP 180


>Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical
           protein T04C10.2a protein.
          Length = 467

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 554 RNVDLHDDLGLESIRKHMKSVSERYFD--KAMRHDNRLIVAAADYSPN-PDHVGASHRRR 384
           ++V+ + D GL +IR+  K ++    D  +      R I+    +  N P  VGA  RR 
Sbjct: 110 QHVEDNRDQGL-NIREKAKQITSLLSDDERLKNERTRFILTRNKFKQNNPGPVGAESRRS 168

Query: 383 PRHVLTDPS-DP 351
            RH +TD S DP
Sbjct: 169 NRHHVTDASLDP 180


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 552 PHEPRSPDG*PAKAGL*GLEGVYVCAGRVXEH 647
           P+ PR P G P + G  G EG     GR+ EH
Sbjct: 153 PNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,098
Number of Sequences: 27780
Number of extensions: 296447
Number of successful extensions: 898
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)