Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_P02
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    29   4.2  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        29   4.2  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKPIASIS 211
           S +PR ER++S  YS  R R+      RSR     + P  S S
Sbjct: 214 SRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPS 256


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKPIASIS 211
           S +PR ER++S  YS  R R+      RSR     + P  S S
Sbjct: 214 SRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPS 256


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 437 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 258
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 257 SH--SKRETRRRSP 222
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 99  RNGSRLQTIPSPDIELSYIRTFGAVMHVLRKNR*HRSPRSKW 224
           R+ S + T+P+P   +SY + F +    L +   +R+ +S W
Sbjct: 179 RSSSNIFTVPAPAAHVSYRQEFASDNESLARKDSYRAMQSSW 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,076
Number of Sequences: 27780
Number of extensions: 348056
Number of successful extensions: 985
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)