Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_O14
         (1075 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   6.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 776 PPPPXXXXLPPPPPPXP 826
           PPPP      PPPPP P
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 773 LPPPPXXXXLPPPPPPXP 826
           +PPP      PPPPPP P
Sbjct: 751 VPPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -3

Query: 638 PPPFXXKXXXRPPPPPPXXXXXFXXXKKXXXXGGGGPPPP 519
           PPP        PPPPPP                G GPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP-------------GVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = +2

Query: 776 PPPPXXXXL---PPPPPPXP 826
           PPPP        PPPPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 437 PPPPPXXRPHTXXPPPXXXG 496
           PPPPP   P +  PPP   G
Sbjct: 12  PPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +2

Query: 776 PPPPXXXXLPP--PPPPXP 826
           PPPP     PP  PPPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +2

Query: 776 PPPPXXXXLP--PPPPPXP 826
           PPPP     P  PPPPP P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 638 PPPFXXKXXXRPPPPPP 588
           PPP   +   +PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 24.2 bits (50), Expect(2) = 4.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 803 PPPPPPXPXXRLXLXXPXXP 862
           PPPPPP P        P  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 21.0 bits (42), Expect(2) = 4.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 782 PPXXXXLPPPPP 817
           PP     PPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 773 LPPPPXXXXLPPPPPP 820
           +P PP     PPPPPP
Sbjct: 351 IPLPPQGRSAPPPPPP 366


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 773 LPPPPXXXXLPPPPPPXP 826
           +P P      PPPPPP P
Sbjct: 346 MPTPQVQGSRPPPPPPMP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,545
Number of Sequences: 5004
Number of extensions: 29408
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)