Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_O13
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    74   3e-14
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    74   3e-14
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -2

Query: 282 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 148
           P KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+
Sbjct: 331 PVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAE 375



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 397 NAFXEYDLXEKSITPMXVFPHYXEVNNDFVMIQGXLHG 284
           NA  ++D  EK ITPM  F  Y  V NDFVM+ G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 32.7 bits (71), Expect = 0.063
 Identities = 25/91 (27%), Positives = 40/91 (43%)
 Frame = -2

Query: 783 QKKAHIMEIQXXRGTHXGQSEMGPENIWENXIPVDXXVCPR*KDXXHWGHPRXKGXXGVI 604
           QKKAH+MEIQ   G+   + E   E+ +E  + +      + +     G  R KG  G  
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREH-FEKTVDI-KSTFEQNEMIDVIGVTRGKGNEGTT 230

Query: 603 FXWHTXXVTP*XTQGF*EXSXHWSWHPFRVR 511
             W T  +     +G  + +   +WHP  V+
Sbjct: 231 ARWGTKRLPRKTHRGLRKVACIGAWHPANVQ 261


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -2

Query: 282 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 148
           P KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+
Sbjct: 331 PVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAE 375



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 397 NAFXEYDLXEKSITPMXVFPHYXEVNNDFVMIQGXLHG 284
           NA  ++D  EK ITPM  F  Y  V NDFVM+ G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 32.7 bits (71), Expect = 0.063
 Identities = 25/91 (27%), Positives = 40/91 (43%)
 Frame = -2

Query: 783 QKKAHIMEIQXXRGTHXGQSEMGPENIWENXIPVDXXVCPR*KDXXHWGHPRXKGXXGVI 604
           QKKAH+MEIQ   G+   + E   E+ +E  + +      + +     G  R KG  G  
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREH-FEKTVDI-KSTFEQNEMIDVIGVTRGKGNEGTT 230

Query: 603 FXWHTXXVTP*XTQGF*EXSXHWSWHPFRVR 511
             W T  +     +G  + +   +WHP  V+
Sbjct: 231 ARWGTKRLPRKTHRGLRKVACIGAWHPANVQ 261


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 135 HGYTQEGSYSRRSCGYHNPS 76
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,548
Number of Sequences: 5004
Number of extensions: 43010
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)